DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Jon25Bii and Ctrb1

DIOPT Version :10

Sequence 1:NP_608882.1 Gene:Jon25Bii / 33707 FlyBaseID:FBgn0031654 Length:276 Species:Drosophila melanogaster
Sequence 2:NP_036668.2 Gene:Ctrb1 / 24291 RGDID:2444 Length:263 Species:Rattus norvegicus


Alignment Length:272 Identity:81/272 - (29%)
Similarity:118/272 - (43%) Gaps:55/272 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 LKDAVLGSGSGSIE------GRITNGYPAYEGKVPYIVGLGFSSDSGGWWCGGSIIGHTWVITAA 85
            |..|..|.|..:|:      .||.||..|..|..|:.|.|  ...:|..:||||:|...||:|||
  Rat    12 LVGATFGCGVPTIQPVLTGLSRIVNGEDAIPGSWPWQVSL--QDKTGFHFCGGSLISEDWVVTAA 74

  Fly    86 HCTHGAHSVTIYYGALWRLQAQYTHTVGSGHFRQHSD-----------------YNTNNLNNDIS 133
            ||......|.:                 :|.|.|.||                 :|...:.|||:
  Rat    75 HCGVKTSDVVV-----------------AGEFDQGSDEENIQVLKIAQVFKNPKFNMFTVRNDIT 122

  Fly   134 LIN--TPHVDFWHLINKVELPDGNERHDSFAGWWALASGWGR-PCDSCGVSDYLNCVDSQIITRD 195
            |:.  || ..|...::.|.||  |...|...|.....:|||: ..::....:.|......|::..
  Rat   123 LLKLATP-AQFSETVSAVCLP--NVDDDFPPGTVCATTGWGKTKYNALKTPEKLQQAALPIVSEA 184

  Fly   196 ECSSVYGTDVITDNVICTSTPGGKSTCAGDSGGPLVLHDRS--KLVGVTSFVAASG-CTSGLPDG 257
            :|...:|:. |||.:||... .|.|:|.||||||||.....  .|.|:.|:  .|| |::..|..
  Rat   185 DCKKSWGSK-ITDVMICAGA-SGVSSCMGDSGGPLVCQKDGVWTLAGIVSW--GSGVCSTSTPAV 245

  Fly   258 FTRVTSYLDWIR 269
            ::|||:.:.|::
  Rat   246 YSRVTALMPWVQ 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jon25BiiNP_608882.1 Tryp_SPc 42..268 CDD:214473 75/248 (30%)
Ctrb1NP_036668.2 Tryp_SPc 34..259 CDD:238113 75/250 (30%)

Return to query results.
Submit another query.