DRSC/TRiP Functional Genomics Resources

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Protein Alignment jet and kdm2ab

DIOPT Version :9

Sequence 1:NP_608880.2 Gene:jet / 33705 FlyBaseID:FBgn0031652 Length:319 Species:Drosophila melanogaster
Sequence 2:XP_001339797.3 Gene:kdm2ab / 799441 ZFINID:ZDB-GENE-101007-5 Length:1263 Species:Danio rerio


Alignment Length:259 Identity:59/259 - (22%)
Similarity:110/259 - (42%) Gaps:71/259 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 TRTASPRPLVTASIAAPRSLFDVCWDDVLIPQVAVYLS----LKDLFNLRCCSRTAQRFVEAALE 82
            :|:.||: ::|..|.......|:.|.::...|::..::    ||||.                  
Zfish  1044 SRSMSPQ-VLTGIIKRQPVTLDLSWANITKKQLSWLINRLPGLKDLV------------------ 1089

  Fly    83 KRQELHLSGNNTKNIDVAFRVLARCCQRLEVLHLACCRWLTD----ELLLPLLANNKKR------ 137
                  |||.|..::..   :.:..|..|..|.|:....:.|    |||.|..::|:.:      
Zfish  1090 ------LSGCNWSSVSA---LSSPSCPLLRSLDLSWADGIKDAQIRELLNPPGSDNRSQMKNMQC 1145

  Fly   138 LWAVNLNECVNITALSLQPIIVECKELRVLKLSKCQWLTTGAVDALTL----HQSKLVEFDISYC 198
            ||...|    .:|..:|:.||.....|..|:||:|. :|.||::.|:.    .::.|...:::.|
Zfish  1146 LWLCGL----EVTEATLRLIIRHMPLLTRLELSRCP-ITDGALNLLSAVGSSTRNTLTHLNLAGC 1205

  Fly   199 GAIGERCLIIFFRKLNKLTVLSLANTPSVTDQVLIQIGNYCRELEHINVIGCAA-ISDYGVHAL 261
            ..:.:||| ::.|:|:.|::|.|                  |:.:.::|..|.: ||:..|:.|
Zfish  1206 TQLTDRCL-VYLRRLSCLSILDL------------------RDCKGVSVQACQSFISELSVNTL 1250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jetNP_608880.2 leucine-rich repeat 85..110 CDD:275381 5/24 (21%)
AMN1 96..>261 CDD:187754 42/179 (23%)
leucine-rich repeat 111..137 CDD:275381 9/29 (31%)
leucine-rich repeat 138..163 CDD:275381 7/24 (29%)
leucine-rich repeat 164..189 CDD:275381 9/28 (32%)
leucine-rich repeat 190..215 CDD:275381 7/24 (29%)
leucine-rich repeat 216..241 CDD:275381 3/24 (13%)
leucine-rich repeat 242..267 CDD:275381 6/21 (29%)
leucine-rich repeat 268..290 CDD:275381
kdm2abXP_001339797.3 JmjC 150..221 CDD:214721
cupin_like 197..297 CDD:304367
zf-CXXC <524..558 CDD:251032
PHD_4 563..624 CDD:293471
F-box-like 1002..1042 CDD:289689
leucine-rich repeat 1036..1060 CDD:275381 5/16 (31%)
leucine-rich repeat 1061..1084 CDD:275381 3/22 (14%)
AMN1 1075..1230 CDD:187754 45/205 (22%)
leucine-rich repeat 1085..1108 CDD:275381 9/49 (18%)
leucine-rich repeat 1109..1142 CDD:275381 9/32 (28%)
leucine-rich repeat 1143..1167 CDD:275381 7/27 (26%)
leucine-rich repeat 1197..1216 CDD:275381 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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