DRSC/TRiP Functional Genomics Resources

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Protein Alignment jet and Fbxl20

DIOPT Version :9

Sequence 1:NP_608880.2 Gene:jet / 33705 FlyBaseID:FBgn0031652 Length:319 Species:Drosophila melanogaster
Sequence 2:XP_006534361.1 Gene:Fbxl20 / 72194 MGIID:1919444 Length:438 Species:Mus musculus


Alignment Length:225 Identity:57/225 - (25%)
Similarity:101/225 - (44%) Gaps:3/225 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 NLRCCSRTAQRFVEAALEKRQELHLSGNN--TKNIDVAFRVLARCCQRLEVLHLACCRWLTDELL 127
            :||.|.......:....:..:.:.:...|  ||..|.....|::.|.:|..|.||.|..:|: :.
Mouse    99 SLRGCLGVGDNALRTFAQNCRNIEVLSLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITN-MS 162

  Fly   128 LPLLANNKKRLWAVNLNECVNITALSLQPIIVECKELRVLKLSKCQWLTTGAVDALTLHQSKLVE 192
            |..|:.....|..:|::.|..:|...:|.::..|..|:.|.|..|..|...|:..:..|..:||.
Mouse   163 LKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVT 227

  Fly   193 FDISYCGAIGERCLIIFFRKLNKLTVLSLANTPSVTDQVLIQIGNYCRELEHINVIGCAAISDYG 257
            .::..|..|.:..||...|..:||..|..:...::||.:|..:|..|..|..:.|..|:.::|.|
Mouse   228 LNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVG 292

  Fly   258 VHALTVHCLRLRTLLIRRCPRVTELSLAPL 287
            ...|..:|..|..:.:..|.::|:.:|..|
Mouse   293 FTTLARNCHELEKMDLEECVQITDSTLIQL 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jetNP_608880.2 leucine-rich repeat 85..110 CDD:275381 6/26 (23%)
AMN1 96..>261 CDD:187754 44/164 (27%)
leucine-rich repeat 111..137 CDD:275381 8/25 (32%)
leucine-rich repeat 138..163 CDD:275381 6/24 (25%)
leucine-rich repeat 164..189 CDD:275381 7/24 (29%)
leucine-rich repeat 190..215 CDD:275381 7/24 (29%)
leucine-rich repeat 216..241 CDD:275381 7/24 (29%)
leucine-rich repeat 242..267 CDD:275381 7/24 (29%)
leucine-rich repeat 268..290 CDD:275381 5/20 (25%)
Fbxl20XP_006534361.1 F-box-like 30..71 CDD:403981
leucine-rich repeat 67..94 CDD:275381
AMN1 95..291 CDD:187754 48/192 (25%)
leucine-rich repeat 95..114 CDD:275381 3/14 (21%)
leucine-rich repeat 121..146 CDD:275381 6/24 (25%)
leucine-rich repeat 147..172 CDD:275381 8/25 (32%)
leucine-rich repeat 173..198 CDD:275381 6/24 (25%)
leucine-rich repeat 199..224 CDD:275381 7/24 (29%)
AMN1 222..396 CDD:187754 27/101 (27%)
leucine-rich repeat 225..250 CDD:275381 7/24 (29%)
leucine-rich repeat 251..276 CDD:275381 7/24 (29%)
leucine-rich repeat 277..302 CDD:275381 7/24 (29%)
leucine-rich repeat 303..328 CDD:275381 5/20 (25%)
leucine-rich repeat 329..357 CDD:275381
leucine-rich repeat 358..382 CDD:275381
leucine-rich repeat 383..408 CDD:275381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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