DRSC/TRiP Functional Genomics Resources

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Protein Alignment jet and Kdm2

DIOPT Version :9

Sequence 1:NP_608880.2 Gene:jet / 33705 FlyBaseID:FBgn0031652 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_001262400.1 Gene:Kdm2 / 41090 FlyBaseID:FBgn0037659 Length:1345 Species:Drosophila melanogaster


Alignment Length:236 Identity:55/236 - (23%)
Similarity:92/236 - (38%) Gaps:51/236 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 VC--WDDVLIPQVAVYLSLKDLF-NLRCCSRTAQRFVEAALEKRQELHLSGNNT----------- 94
            ||  |.:..:.        .||: .:.|........:..|:.:||..||..:.|           
  Fly  1088 VCKVWSNAAVD--------PDLWKKMNCSEHKMSASLLTAIVRRQPEHLILDWTQIAKRQLAWLV 1144

  Fly    95 ------KNIDV------AFRVLARC-CQRLEVLHLACCRWLTDELL----------LPLLANNKK 136
                  ||:.:      |...|..| |..|:.|.|:..|.|.|..:          .|.|:::|.
  Fly  1145 ARLPALKNLSLQNCPIQAVLALHTCLCPPLQTLDLSFVRGLNDAAIRDILSPPKDSRPGLSDSKT 1209

  Fly   137 RLWAVNLNEC--VNITALSLQPIIVECKELRVLKLSKCQWLTTGAVDAL---TLHQSKLVEFDIS 196
            ||..:.:.:.  .:|:.::::.|......||.|.||.||.:|...|..:   |...::|.|.::|
  Fly  1210 RLRDLKVMKLAGTDISDVAVRYITQSLPYLRHLDLSSCQRITDAGVAQIGTSTTATARLTELNLS 1274

  Fly   197 YCGAIGERCLIIFFRKLNKLTVLSLANTPSVTDQVLIQIGN 237
            .|..:.|..| ....|...|..|.|.:.|.|:.|.:|:..:
  Fly  1275 ACRLVSENAL-EHLAKCEGLIWLDLRHVPQVSTQSVIRFAS 1314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jetNP_608880.2 leucine-rich repeat 85..110 CDD:275381 10/48 (21%)
AMN1 96..>261 CDD:187754 42/164 (26%)
leucine-rich repeat 111..137 CDD:275381 9/35 (26%)
leucine-rich repeat 138..163 CDD:275381 3/26 (12%)
leucine-rich repeat 164..189 CDD:275381 10/27 (37%)
leucine-rich repeat 190..215 CDD:275381 7/24 (29%)
leucine-rich repeat 216..241 CDD:275381 7/22 (32%)
leucine-rich repeat 242..267 CDD:275381
leucine-rich repeat 268..290 CDD:275381
Kdm2NP_001262400.1 cupin_like 231..331 CDD:304367
PRTases_typeI <394..>467 CDD:294217
zf-CXXC 670..716 CDD:251032
PHD_4 721..801 CDD:293471
F-box-like <1073..1108 CDD:289689 5/27 (19%)
leucine-rich repeat 1102..1125 CDD:275381 3/22 (14%)
leucine-rich repeat 1126..1149 CDD:275381 3/22 (14%)
leucine-rich repeat 1150..1173 CDD:275381 6/22 (27%)
AMN1 1166..>1320 CDD:187754 40/150 (27%)
leucine-rich repeat 1174..1213 CDD:275381 11/38 (29%)
leucine-rich repeat 1214..1238 CDD:275381 2/23 (9%)
leucine-rich repeat 1239..1267 CDD:275381 10/27 (37%)
leucine-rich repeat 1268..1292 CDD:275381 7/24 (29%)
leucine-rich repeat 1293..1317 CDD:275381 7/22 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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