DRSC/TRiP Functional Genomics Resources

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Protein Alignment jet and fbxl2

DIOPT Version :9

Sequence 1:NP_608880.2 Gene:jet / 33705 FlyBaseID:FBgn0031652 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_956400.1 Gene:fbxl2 / 378737 ZFINID:ZDB-GENE-030925-12 Length:432 Species:Danio rerio


Alignment Length:234 Identity:62/234 - (26%)
Similarity:113/234 - (48%) Gaps:16/234 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 DLFNLRCCSRTAQRFVEAALEKR-----QELHLSGNNTKNIDVAFRVLARCCQRLEVLHLACCRW 121
            ||||.:  :....|.|| .:.||     ::|.|.|..:.. |.:.:..|:.|:.:|.|:|..|..
Zfish    65 DLFNFQ--TDIEGRVVE-NISKRCGGFLRQLSLRGCLSVG-DASMKTFAQNCRNIEHLNLNGCTK 125

  Fly   122 LTDELLLPLLANNKK---RLWAVNLNECVNITALSLQPIIVECKELRVLKLSKCQWLTTGAVDAL 183
            :||...:.|    .|   :|..::|..||:||..:|:.:...|:.|..|.||.|..:|:..::||
Zfish   126 ITDSTCISL----SKFCFKLRHLDLTSCVSITNHALKALSEGCRMLENLNLSWCDQITSDGIEAL 186

  Fly   184 TLHQSKLVEFDISYCGAIGERCLIIFFRKLNKLTVLSLANTPSVTDQVLIQIGNYCRELEHINVI 248
            :...:.|....:..|..:.:..|....:...:|..:::.:...:||...:.:...|.:|:.:.:.
Zfish   187 SRGCTALRALFLRGCTQLDDTALKHLQKHCPELMTINMQSCTQITDDGFVSLCRGCHKLQMVCIS 251

  Fly   249 GCAAISDYGVHALTVHCLRLRTLLIRRCPRVTELSLAPL 287
            ||:.|:|..:.||.::|.||:.|...||..||:.....|
Zfish   252 GCSNITDASLTALGLNCQRLKILEAARCSHVTDAGFTVL 290

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
jetNP_608880.2 leucine-rich repeat 85..110 CDD:275381 6/24 (25%)
AMN1 96..>261 CDD:187754 39/167 (23%)
leucine-rich repeat 111..137 CDD:275381 8/28 (29%)
leucine-rich repeat 138..163 CDD:275381 8/24 (33%)
leucine-rich repeat 164..189 CDD:275381 8/24 (33%)
leucine-rich repeat 190..215 CDD:275381 3/24 (13%)
leucine-rich repeat 216..241 CDD:275381 4/24 (17%)
leucine-rich repeat 242..267 CDD:275381 8/24 (33%)
leucine-rich repeat 268..290 CDD:275381 7/20 (35%)