DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment jet and CG9003

DIOPT Version :9

Sequence 1:NP_608880.2 Gene:jet / 33705 FlyBaseID:FBgn0031652 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_001097271.1 Gene:CG9003 / 36244 FlyBaseID:FBgn0033639 Length:651 Species:Drosophila melanogaster


Alignment Length:357 Identity:82/357 - (22%)
Similarity:143/357 - (40%) Gaps:67/357 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 ASGGQPTRTASPRPLVTASIAAPRSLFDVC----------------------------------- 45
            |:.|..|...:|.|.|:.:.....|..|.|                                   
  Fly   166 ATFGSATPVINPLPAVSINPKIMESSSDSCSLSSSTTPDVGLADQQRNMAGSAQDQSEDQSQTFL 230

  Fly    46 ----WDDVLIPQVAVYLSLK-----DLFNLRCCSRTAQRFVEAALE--KRQELHL-------SGN 92
                .||.||.|:...:.|:     |:.:|..|::..:.:...||:  ..|:::|       .|.
  Fly   231 GATELDDELIKQLPKEVLLRVFSYLDVVSLCRCAQVCKYWNVLALDGSSWQKINLFDFQRDIEGP 295

  Fly    93 NTKNIDVAFRVLARCCQRLEVLHLACCRWLTDELLLPLLANNKKRLWAVNLNECVNITALSLQPI 157
            ..:||.      .||...|:.|.|..|:.:.|: .:..|||:...:..::|::|..||.:|.|.|
  Fly   296 VIENIS------QRCRGFLKSLSLRGCQSVGDQ-SVRTLANHCHNIEHLDLSDCKKITDISTQSI 353

  Fly   158 IVECKELRVLKLSKCQWLTTGAVDALTLHQSKLVEFDISYCGAIGERCLIIFFRKLNKLTVLSLA 222
            ...|.:|..:.|..|..:|..::..|:.....|:|.::|:|..|.|..:....|...||...|..
  Fly   354 SRYCSKLTAINLHSCSNITDNSLKYLSDGCPNLMEINVSWCHLISENGVEALARGCVKLRKFSSK 418

  Fly   223 NTPSVTDQVLIQIGNYCRELEHINVIGCAAISDYGVHALTVHCLRLRTLLIRRCPRVTELSLAPL 287
            ....:.|..::.:..||.:|..:|:..|..|:|..:..|..:|.:|:.|.:.:|..:|:|:|..|
  Fly   419 GCKQINDNAIMCLAKYCPDLMVLNLHSCETITDSSIRQLAANCHKLQKLCVSKCADLTDLTLLSL 483

  Fly   288 RQRRLYID-------RPQPDVGLNAYNLNDFY 312
            .|....::       |...|:|..|...|..|
  Fly   484 SQHNHLLNTLEVSGCRNFTDIGFQALGRNCKY 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jetNP_608880.2 leucine-rich repeat 85..110 CDD:275381 7/31 (23%)
AMN1 96..>261 CDD:187754 43/164 (26%)
leucine-rich repeat 111..137 CDD:275381 8/25 (32%)
leucine-rich repeat 138..163 CDD:275381 8/24 (33%)
leucine-rich repeat 164..189 CDD:275381 5/24 (21%)
leucine-rich repeat 190..215 CDD:275381 7/24 (29%)
leucine-rich repeat 216..241 CDD:275381 5/24 (21%)
leucine-rich repeat 242..267 CDD:275381 7/24 (29%)
leucine-rich repeat 268..290 CDD:275381 7/21 (33%)
CG9003NP_001097271.1 F-box-like 240..285 CDD:289689 9/44 (20%)
leucine-rich repeat 280..307 CDD:275381 7/32 (22%)
AMN1 <308..453 CDD:187754 39/145 (27%)
leucine-rich repeat 308..327 CDD:275381 5/19 (26%)
leucine-rich repeat 334..359 CDD:275381 8/24 (33%)
leucine-rich repeat 360..385 CDD:275381 5/24 (21%)
leucine-rich repeat 386..411 CDD:275381 7/24 (29%)
AMN1 <409..586 CDD:187754 27/107 (25%)
leucine-rich repeat 412..437 CDD:275381 5/24 (21%)
leucine-rich repeat 438..463 CDD:275381 7/24 (29%)
leucine-rich repeat 464..515 CDD:275381 13/50 (26%)
leucine-rich repeat 516..541 CDD:275381 82/357 (23%)
leucine-rich repeat 542..561 CDD:275381
leucine-rich repeat 571..595 CDD:275381
leucine-rich repeat 596..621 CDD:275381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45457944
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.