DRSC/TRiP Functional Genomics Resources

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Protein Alignment jet and Kdm2b

DIOPT Version :9

Sequence 1:NP_608880.2 Gene:jet / 33705 FlyBaseID:FBgn0031652 Length:319 Species:Drosophila melanogaster
Sequence 2:XP_038945396.1 Gene:Kdm2b / 304495 RGDID:1310217 Length:1350 Species:Rattus norvegicus


Alignment Length:238 Identity:57/238 - (23%)
Similarity:83/238 - (34%) Gaps:94/238 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 RWLTDELLLPLLANNKKRLWA-VNLNECVNITALSL------QPIIVECK--------------- 162
            ||..|           ||||. ::||.|.:||.|.|      ||:.::..               
  Rat  1108 RWCCD-----------KRLWTRIDLNHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINR 1161

  Fly   163 --ELRVLKLSKCQWLTTGAVDAL---------TL-----------------------------HQ 187
              .||.|.||.|.|:   ||.||         ||                             ::
  Rat  1162 LPGLRDLVLSGCSWI---AVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNR 1223

  Fly   188 SKLVEF-DISYCGA-IGERCLIIFFRKLNKLTVLSLANTPSVTDQ---VLIQIGNYCRE-LEHIN 246
            |||... ::...|. |.:..|.:..|.:..|:.|.|:....||||   :|..:|...|: |..||
  Rat  1224 SKLRNIVELRLAGLDITDVSLRLIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEIN 1288

  Fly   247 VIGCAAISDYGVHALTVHCLRLRTLLIRRCPRVTELSLAPLRQ 289
            :..|..::|        .||.    ..:||..:..:.|...:|
  Rat  1289 LSDCNKVTD--------QCLS----FFKRCGNICHIDLRYCKQ 1319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jetNP_608880.2 leucine-rich repeat 85..110 CDD:275381
AMN1 96..>261 CDD:187754 51/208 (25%)
leucine-rich repeat 111..137 CDD:275381 3/16 (19%)
leucine-rich repeat 138..163 CDD:275381 11/48 (23%)
leucine-rich repeat 164..189 CDD:275381 13/62 (21%)
leucine-rich repeat 190..215 CDD:275381 5/26 (19%)
leucine-rich repeat 216..241 CDD:275381 9/27 (33%)
leucine-rich repeat 242..267 CDD:275381 6/24 (25%)
leucine-rich repeat 268..290 CDD:275381 4/22 (18%)
Kdm2bXP_038945396.1 JmjC 151..226 CDD:214721
cupin_RmlC-like 198..304 CDD:424065
JHD 303..>338 CDD:407680
CTD_KDM2B 476..584 CDD:412026
zf-CXXC <626..662 CDD:366873
PHD_KDM2B 672..733 CDD:277114
PTZ00449 <731..967 CDD:185628
F-box-like 1082..1120 CDD:403981 7/22 (32%)
leucine-rich repeat 1116..1140 CDD:275381 8/23 (35%)
AMN1 1132..1321 CDD:187754 44/203 (22%)
leucine-rich repeat 1141..1164 CDD:275381 0/22 (0%)
leucine-rich repeat 1165..1188 CDD:275381 11/25 (44%)
leucine-rich repeat 1189..1228 CDD:275381 5/38 (13%)
leucine-rich repeat 1229..1253 CDD:275381 4/23 (17%)
leucine-rich repeat 1254..1283 CDD:275381 10/28 (36%)
leucine-rich repeat 1284..1308 CDD:275381 9/35 (26%)
leucine-rich repeat 1309..1333 CDD:275381 2/11 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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