DRSC/TRiP Functional Genomics Resources

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Protein Alignment jet and pof2

DIOPT Version :10

Sequence 1:NP_608880.2 Gene:jet / 33705 FlyBaseID:FBgn0031652 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_596079.1 Gene:pof2 / 2540355 PomBaseID:SPBC25B2.11 Length:463 Species:Schizosaccharomyces pombe


Alignment Length:363 Identity:77/363 - (21%)
Similarity:126/363 - (34%) Gaps:126/363 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 NLRCCSRTAQRFVEAALEKRQELHLSGNNTKNI------------------------------DV 99
            ||..|:|.::..:...|  .|.|:|...|..||                              |.
pombe   100 NLSGCTRISEPLIGKLL--YQNLNLVTINFSNIFSLPANILEYISDNCPNLKALNIGNCGLVEDT 162

  Fly   100 AFRVLARCCQRLEVLHLACCRWLTDELL-------------------------LPLLANNKKRLW 139
            ....:.:.|..|..|.:..||.|||..|                         |..|.:..:.|.
pombe   163 GMVQIIKRCPYLNRLIIPNCRKLTDVSLQILSEKEDLIELDISGCEGFHNADTLSRLVSRNRGLK 227

  Fly   140 AVNLNECVNIT----------------ALSLQPI---------IVECK--ELRVLKLSKCQWLTT 177
            .::::.|..::                ||||..:         ::.||  :|..|.||||..||.
pombe   228 ELSMDGCTELSHFITFLNLNCELDAMRALSLNNLPDLKDSDIELITCKFSKLNSLFLSKCIGLTD 292

  Fly   178 GAVDALTLHQSKLVEFDISYC---GAIGERCLI--------IFF---RKLNKLTVLSLANTP--- 225
            .::.:||.....|....:.:|   ..||.:||:        |.|   .:|:.:.|.::|..|   
pombe   293 SSLLSLTKLSQSLTTLHLGHCYEITDIGVQCLLKSCKNITYIDFGGCLRLSDIAVSAIAKLPYLQ 357

  Fly   226 --------SVTD-QVLIQIGNYCRELEHINVIGCAAISDYGVHALTVHCLRLRTLLIRRCPRVTE 281
                    .:|| .|::..|::.|.||.:::..|..::...|..|..:|..|:.|.:   ..:..
pombe   358 RVGLVKCICLTDLSVILLSGSFSRNLERVHLSYCIGLTAKSVSYLMYNCKTLKHLSV---TGINS 419

  Fly   282 LSLAPLRQRRLYIDRPQPDVGLNAYNLNDFYPSDFLVY 319
            :....||.    ..||.|| |:|        ||...|:
pombe   420 ILCTELRS----FSRPIPD-GIN--------PSQVPVF 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jetNP_608880.2 F-box_FBXL15 41..84 CDD:438898 5/18 (28%)
leucine-rich repeat 85..110 CDD:275381 8/54 (15%)
AMN1 96..>261 CDD:187754 53/272 (19%)
leucine-rich repeat 111..137 CDD:275381 10/50 (20%)
leucine-rich repeat 138..163 CDD:275381 8/51 (16%)
leucine-rich repeat 164..189 CDD:275381 10/24 (42%)
leucine-rich repeat 190..215 CDD:275381 9/38 (24%)
leucine-rich repeat 216..241 CDD:275381 7/36 (19%)
leucine-rich repeat 242..267 CDD:275381 6/24 (25%)
leucine-rich repeat 268..290 CDD:275381 4/21 (19%)
pof2NP_596079.1 F-box-like 2..43 CDD:463757
leucine-rich repeat 96..121 CDD:275381 6/22 (27%)
leucine-rich repeat 122..141 CDD:275381 4/18 (22%)
AMN1 <143..292 CDD:187754 27/148 (18%)
leucine-rich repeat 148..173 CDD:275381 2/24 (8%)
leucine-rich repeat 174..225 CDD:275381 10/50 (20%)
leucine-rich repeat 226..278 CDD:275381 8/51 (16%)
AMN1 <278..428 CDD:187754 37/156 (24%)
leucine-rich repeat 279..304 CDD:275381 10/24 (42%)
leucine-rich repeat 305..330 CDD:275381 6/24 (25%)
leucine-rich repeat 331..355 CDD:275381 5/23 (22%)
leucine-rich repeat 356..382 CDD:275381 4/25 (16%)
leucine-rich repeat 383..408 CDD:275381 6/24 (25%)
leucine-rich repeat 409..427 CDD:275381 3/20 (15%)
Blue background indicates that the domain is not in the aligned region.

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