DRSC/TRiP Functional Genomics Resources

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Protein Alignment betaggt-I and rabggtb

DIOPT Version :9

Sequence 1:NP_525100.2 Gene:betaggt-I / 33704 FlyBaseID:FBgn0015000 Length:395 Species:Drosophila melanogaster
Sequence 2:NP_001106636.1 Gene:rabggtb / 100127877 XenbaseID:XB-GENE-953600 Length:331 Species:Xenopus tropicalis


Alignment Length:330 Identity:101/330 - (30%)
Similarity:161/330 - (48%) Gaps:43/330 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VLLSKHAKNLLRFLNLLPARMASH-----DNTRSTIVFFAVCGLDVLNSLHLVPPQLRQDIIDWI 69
            :||.|||    :::....|:...:     :..|.:.:::.:..:|::..|..:.   :::|:.:|
 Frog    18 LLLEKHA----QYIESYGAKKDDYEYCMSEYLRMSGIYWGLTVMDLMGELQRMN---KEEILAFI 75

  Fly    70 YGGLVVPRDNEKNCGGFMGCRAMVPKTEDAEILECMRNYQWGHLAMTYTSLAVLVTLGDDLSRLD 134
                   :..:.:||||.......|                 ||..|.:::.:| ||.|.||.:|
 Frog    76 -------KSCQHDCGGFSASIGHDP-----------------HLLYTLSAVQIL-TLYDSLSAVD 115

  Fly   135 RKSIVDGVAAVQKPEGSFSACIDGSEDDMRFVYCAATICYMLDYWGDVNKETMFQFITRSLRYDY 199
            ...|||.|.::||.:|||:....| |.|.||.:||.....:|.....:|.|...:|:...:.:|.
 Frog   116 SNRIVDYVQSLQKEDGSFAGDKWG-EIDTRFSFCAVATLALLGRLDAINIEKAIEFVLSCMNFDG 179

  Fly   200 GFSQELEGEAHGGTTFCALAALHLSGQLHRLDATTVERMKRWLIFRQM--DGFQGRPNKPVDTCY 262
            ||......|:|.|..:|....|.::.|||:::|   :.:..||..||:  .|..|||.|..|.||
 Frog   180 GFGCRPGSESHAGQIYCCTGFLAITDQLHQVNA---DLLGWWLCERQLPSGGLNGRPEKLPDVCY 241

  Fly   263 SFWIGASLCILDGFELTDYARNREFILSTQDKLIGGFAKWPQATPDPFHTYLGLCGLAFTGEPGL 327
            |:|:.|||.|:......|..:.|.|:|:.||:..||||..|....|||||..|:.||:..||..:
 Frog   242 SWWVLASLKIIGRLHWIDREKLRLFVLACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEERI 306

  Fly   328 SPVNP 332
            .||||
 Frog   307 KPVNP 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaggt-INP_525100.2 CAL1 10..336 CDD:227362 101/330 (31%)
GGTase-I 14..321 CDD:239225 93/313 (30%)
rabggtbNP_001106636.1 PLN03201 17..323 CDD:215630 101/330 (31%)
GGTase-II 18..301 CDD:239224 95/318 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1042804at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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