DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sgs1 and srap-1

DIOPT Version :9

Sequence 1:NP_523475.3 Gene:Sgs1 / 33701 FlyBaseID:FBgn0003372 Length:1286 Species:Drosophila melanogaster
Sequence 2:NP_001364584.1 Gene:srap-1 / 174709 WormBaseID:WBGene00011522 Length:3532 Species:Caenorhabditis elegans


Alignment Length:1727 Identity:469/1727 - (27%)
Similarity:613/1727 - (35%) Gaps:595/1727 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IQVKNVKANYDWD------SMQDGPSEEIIPGCGGDTIYYPDPVQ-----PCD-TDSNPTTTKPR 67
            :.:||.|...:.|      ::.||..|.     |.||....:|..     |.| ::.:..|....
 Worm   827 VPLKNSKPAENTDGEVTESNLPDGSGEH-----GADTASGEEPTSTPITAPTDFSNDDQVTEASG 886

  Fly    68 QKTKRPKSTRRTTKRTKRPRRKTTKWTTKRATKRTTKRTT----RRRP----TTPKTPDTTDSPI 124
            ::|....:|..:::.|      ||...|:.:.:.||..||    ...|    |:..|..:.|..:
 Worm   887 EETTTAAATEASSEET------TTSAVTEGSGEETTVPTTVESSGEEPALSSTSVPTELSKDDQV 945

  Fly   125 T-TTGAECTCSDRTTASSTDSTTDRTT-VTNTDWTTPLCTD------TPPCT---CSEE---SST 175
            | .:|.|.|.:..|.|||.::||...| .:..:.||...|:      |.|.|   ..||   |||
 Worm   946 TEASGEETTTAAATEASSEETTTPAVTEASGEESTTSAVTEGSGEEITVPTTVESSGEEPALSST 1010

  Fly   176 AIPSSPCID----------TSTVIPTSPCTQETTTPTPTCSTQGTQTTPCTCAQTT--------- 221
            ::|:....|          |:|...|...::|||||..| ...|.::|  |.|.|.         
 Worm  1011 SVPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVT-EASGEEST--TSAVTEGSGEEITVH 1072

  Fly   222 TTPRST----TTTSTSRPT------TTTPRSTTTTTTSRPT------TTTPRSTTTT----TTRR 266
            ||..|:    ..:|||.||      ..|..|...|||:..|      ||||..|..:    ||..
 Worm  1073 TTVESSGEEPAISSTSIPTELSKDDQVTEASGEETTTAAATEASLEATTTPAVTEASGEEITTSA 1137

  Fly   267 PTTTTPRCTT-------------TTSTCAPT------TTTPRSTTTTTTSRPT------TTTPRC 306
            .|..:...||             ::||..||      ..|..|...|||:..|      ||||..
 Worm  1138 VTEESGEETTVVAVVESSGEEQASSSTSIPTELSKDDQVTEASGEETTTAAATEASSEATTTPAV 1202

  Fly   307 TTT----TSTCSPTRTTPRSTTTTSTSRPTTTTPRCTTTPSTSRPTTT---TPRSTTKTSTCAPT 364
            |..    |:..:...::.....::|||.||..:.....|.::...|.|   |..|..:|:|.|.|
 Worm  1203 TEASGEETTVVAVVESSGEEPASSSTSIPTELSKDNQVTEASGEETNTAAVTEGSGEETTTAAAT 1267

  Fly   365 TTTPRPTT--------------------------TPSTSRPTTTTPRSTTTTSTSRPTTT---TP 400
            .|:...||                          :.|||.||..:.....|.::...|||   |.
 Worm  1268 ETSSEETTISAVTEASGEETTVVAVVQSSGEEPASSSTSIPTELSKDDQVTEASGEETTTAAATE 1332

  Fly   401 RSTTTTTTRRPTTTTPRSTT-------------TTSTSRPT------TTTPRSTTTTTTSRPT-- 444
            .|:..|||...|..:...||             ::|||.||      ..|..|...|||:..|  
 Worm  1333 ASSEETTTLAVTEGSGEETTVVAVVESSGEEPASSSTSIPTELSKDDQVTEASGEETTTAAVTEG 1397

  Fly   445 ----TTTPRSTTTTCTCSPTTTTPRST------TTT---------------------------ST 472
                |.||.:|..:   |..||||..|      |||                           ||
 Worm  1398 SGEETVTPAATEAS---SEATTTPAGTEASGEETTTSAVTEGSGEENTVVAVVESSGEEPASSST 1459

  Fly   473 SRPT------TTTPRSTTTTSTSGPTTTTPRSTTT----------TTTSGPTTTTPRSTTTTC-- 519
            |.||      ..|..|...|:|:..|.|:...|||          ||||..|..:...|||:.  
 Worm  1460 SIPTELSNDDQVTEGSGEETTTAAATETSSEETTTSVVTEGSGEETTTSAVTEASGEETTTSAVT 1524

  Fly   520 ------------------------TCSPTTTTPRSTTTPSTSRPTTT---TPRSTTTTCTCSPTT 557
                                    |..||..:.....|.::...|||   |..|:..|.|.:.|.
 Worm  1525 EGSGEENTVVAVVQSSGEEPASSSTSIPTELSKDDQVTEASGEETTTAAATEASSEETTTSAVTE 1589

  Fly   558 TTPRSTTTTSTSR----PTTT---TPRSTTTTTTSRPTTTTPRSTTT---TSTSGPTTTTPRSTT 612
            .:...|||::.|.    .|||   |..|:..|.||..|..:...|||   |..||..|||..:|.
 Worm  1590 GSGEETTTSAVSEGSGDETTTAAATEASSEETITSAVTEGSGEETTTSAVTEGSGEETTTAAATE 1654

  Fly   613 TTS----TSGPTTTTPRSTTT---TSTSGPTTTTPRSTTTTSTSG----------PT------TT 654
            .:|    ||..|..:...|||   |..||...|.|   ||..:||          ||      ..
 Worm  1655 ASSEETITSAVTEGSGEETTTSAVTEGSGEEITVP---TTVESSGEEPALSSMSIPTELSKDDQV 1716

  Fly   655 TPRSTTTTSTSGPTTTTPRSTTT---TSTSGPTTTT----------PRSTTT------------T 694
            |..|...|:|:..|.|:...|||   |..||..||.          |.|::|            |
 Worm  1717 TEASGEETTTAAATETSSEETTTSVVTEGSGEQTTVVAVVESSGEEPASSSTSIPTELSKDDQVT 1781

  Fly   695 STSGPTTTTPRST------TTTST----SGPTTTT----------PRSTTT------------TS 727
            ..||..|||..:|      |.||.    ||..||.          |.|::|            |.
 Worm  1782 EASGEETTTAAATEASSEETITSAVTEGSGEETTVVAVVESSGEEPASSSTSVPTELSKDDQVTE 1846

  Fly   728 TSGPTTTTPRST------TTTST----SGPTTTTPRSTTTTSTSGPTTTTPRST------TTTST 776
            .||..|||..:|      ||||.    ||..|||   :..|..|...||||..|      ||||.
 Worm  1847 ASGEETTTAAATEASSEETTTSAVTEGSGEETTT---SAVTEASSEATTTPAGTEASGEETTTSA 1908

  Fly   777 ----SGPTTTT----------PRSTTT------------TSTSGPTTTTPRST-----TTTST-- 808
                ||..||.          |.|::|            |..||..|.|..:|     ||||.  
 Worm  1909 VTEGSGEETTVVAVVESSGEEPASSSTSIPTELSKNDQVTEASGEETITAAATEASEETTTSAVT 1973

  Fly   809 --SGPTTTT----------PRSTTT------------TSTSGPTTTTPRST-----TTTST---- 840
              ||..||.          |.|::|            |..||..|||..:|     ||||.    
 Worm  1974 EGSGEDTTVVAVVELSGEQPASSSTSIPTELSKDDQVTEASGEETTTAAATEASEETTTSAVTEG 2038

  Fly   841 SGPTTTT----------PRSTTT------------TSTSGPTTTTPRST-----TTTST----SG 874
            ||..||.          |.|::|            |..||..|||..:|     ||||.    ||
 Worm  2039 SGEETTVVAVVESSGEEPASSSTSIPTELSKDDQVTEASGEETTTAAATEASEETTTSAVTEGSG 2103

  Fly   875 PTTTT----------PRSTTT------------TSTSGPTTTTPRST-----TTTST----SGPT 908
            ..||.          |.|::|            |..||..|||..:|     ||||.    ||..
 Worm  2104 EDTTVVAVVESSGEQPASSSTSIPTELSKDDQVTEASGEETTTAAATEASEETTTSAVTEGSGED 2168

  Fly   909 TT-------TPRSTTTTSTSCPTTTTPRSTTTTCTSGPTTTTPRSTTT---TCTSCPTTTTPRST 963
            ||       :.....::|||.||..: :....|..||..|||..:|..   |.||..|..:...|
 Worm  2169 TTVVAVVESSGEQPASSSTSIPTELS-KDDQVTEASGEETTTAAATEASEETTTSAVTEGSGEET 2232

  Fly   964 T-------------TTCTSCPTTTTPRSTTTTCTSGPTTT---TPRSTTKTSTCAPTTTTPRSTT 1012
            |             ::.||.||..:.....|..:...|||   |..|:.:|:|.|.|..:...||
 Worm  2233 TVVAVVESSGEEPASSSTSIPTELSKDDKVTEASGEETTTAAATDASSEETTTSAVTEGSGEETT 2297

  Fly  1013 -------------TTSTSRPT---------------TTTPRSTTT---TTTSRPTTTTPRSTT-- 1044
                         ::|||.||               |||..:|..   ||||..|..:...||  
 Worm  2298 VVAVVESSDEEPASSSTSIPTELSKDDQVTEASGEETTTAAATEASEETTTSAVTEGSGEETTVV 2362

  Fly  1045 -----------TPSTSRPTTTTPRSTTTTSTSRPTTT---TPRSTTKTSTCAPTTTTPRSTTTTT 1095
                       :.|||.||..:.....|.::...|||   |..|:.:|:|.|.|..:...||...
 Worm  2363 AVVESSGEEPASSSTSIPTELSKDDKVTEASGEETTTAAATDASSEETTTSAVTEGSGEETTVVA 2427

  Fly  1096 TSRPTTTTPRSTTTTTTSRPTTTTPRSTTTPCTSRPTTT---TPRSTTTTTTS------RPTTTT 1151
            ....:...|.|   ::||.||..:.....|..:...|||   |..|..|||::      ..||..
 Worm  2428 VVESSDEEPAS---SSTSIPTELSKDDQVTEASGEETTTAAATEASEETTTSAVTEGSGEETTVV 2489

  Fly  1152 ---------PRSTTTPCPT------TTPSASPTRTTT 1173
                     |.|::|..||      ....||...|||
 Worm  2490 AVVESSGEEPASSSTSIPTELSKDDQVTEASGEETTT 2526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sgs1NP_523475.3 None
srap-1NP_001364584.1 PRK13108 <1876..2013 CDD:237284 39/139 (28%)
PAN_APPLE <3374..3413 CDD:412169
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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