DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3008 and riok3

DIOPT Version :9

Sequence 1:NP_608871.1 Gene:CG3008 / 33693 FlyBaseID:FBgn0031643 Length:603 Species:Drosophila melanogaster
Sequence 2:NP_001004996.1 Gene:riok3 / 448471 XenbaseID:XB-GENE-971902 Length:508 Species:Xenopus tropicalis


Alignment Length:548 Identity:227/548 - (41%)
Similarity:316/548 - (57%) Gaps:87/548 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SPWVKTSEPVQQVNLADIMSEQYAHKLHDKELQRHTEKLKRPDEQIAPVWGSQASSPPAPNAQSI 67
            |||...::|..|.:||::|||:.|     :|||...|....|:|                     
 Frog    14 SPWGVAAKPAVQCSLAEVMSEELA-----RELQLEEESHVFPEE--------------------- 52

  Fly    68 QSDAEDWEDYSALLNDEGNVAEDIQLPEDSDAVIAQLLQSQFDHEYNEELRRIERQQNKQSKVTV 132
                        :|:::|.......:...||.|:||:||.|||.||:.:|.|.|::.|..|||::
 Frog    53 ------------VLSEDGPFLSSDNIDTSSDEVLAQMLQMQFDKEYDAQLLREEKKFNGDSKVSI 105

  Fly   133 TLNKFLRDGDAEFLHDTAEDDYEEDELEQQKHDWDRFEDNERQLDS---IPRCGFKVNKEGEMIT 194
            :...:.:      :|.:.|:|..|||:     ||.....:..:.|.   .|:.|| |.|..::.|
 Frog   106 SFENYRK------VHPSEENDSSEDEV-----DWQDTRHDPYKADKPTPTPKKGF-VGKGKDITT 158

  Fly   195 KHDPQLCAVRNAQRVMSFPPEFPTGDAAGFDMKLSNKVFNQLRAHS---RRGRSDKHEK--VATA 254
            |||..:|..:|..|:.:|.|||..||....|:||||:|||.|:.||   :|..:..|:|  |:||
 Frog   159 KHDEVVCGRKNTARMENFAPEFQVGDGIVMDLKLSNQVFNALKQHSISEQRKSARLHDKKEVSTA 223

  Fly   255 EMGLDAGTRLLLYKLINNQILEQINGIISTGKEAVILHANSDANYTGSNEHGHQSGVLVPPQLLP 319
            |..:|..|||||||::|:.:||.|||.:|||||:|:.||               ||..:..|.:|
 Frog   224 EKVVDPKTRLLLYKMVNSGVLETINGCVSTGKESVVFHA---------------SGGSMEDQEIP 273

  Fly   320 RECAIKIFKTTLNEFKQRDRYIKDDYRFKDRFSKQNHRVIINMWAEKEMHNLMRMQAIGLNVPDV 384
            .|||||:|||||||||.||:|||||||||:||||.|.|.||.||||||||||.||...|:..|:|
 Frog   274 AECAIKVFKTTLNEFKNRDKYIKDDYRFKERFSKLNPRKIIRMWAEKEMHNLKRMHKAGIPCPEV 338

  Fly   385 VVLKKHVLVMRFIGDNHNAAPKLKDARLSDAELSCAYEEIVAAMHKLYNEAKLVHADMSEYNILW 449
            |:||||||||.|||::...||.||:|:|...:...||.::::.|.:||.:..|||||:||||::|
 Frog   339 VLLKKHVLVMSFIGNDQIPAPTLKEAKLGLEDSKQAYYQVLSMMKQLYEQCNLVHADLSEYNMMW 403

  Fly   450 FEGKCWFIDVAQSVEPKHPSALEFLMRDCGNIVNFFERRGLPNIYTKEQLFEFITGLN----SEV 510
            .:||.|.|||:|||||.||..||||.|||.|:..||::.|:.......:||..::|||    ::|
 Frog   404 HDGKVWLIDVSQSVEPTHPHGLEFLYRDCRNVSQFFQKAGVSETPHARELFNIVSGLNISSDNQV 468

  Fly   511 HTAAQLE----------QIHTRGASISQ 528
            ...|::|          |:|.:..||.|
 Frog   469 DFMAEIEALEKVNEDHVQMHGKKVSIYQ 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3008NP_608871.1 RIO1 242..505 CDD:224632 140/264 (53%)
RIO3_euk 278..488 CDD:270697 119/209 (57%)
riok3NP_001004996.1 RIO3_euk 247..442 CDD:270697 119/209 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 227 1.000 Domainoid score I2449
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H2843
Inparanoid 1 1.050 389 1.000 Inparanoid score I1961
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1238900at2759
OrthoFinder 1 1.000 - - FOG0007508
OrthoInspector 1 1.000 - - oto102452
Panther 1 1.100 - - LDO PTHR45723
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5599
SonicParanoid 1 1.000 - - X5639
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.190

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