DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3008 and riok1

DIOPT Version :9

Sequence 1:NP_608871.1 Gene:CG3008 / 33693 FlyBaseID:FBgn0031643 Length:603 Species:Drosophila melanogaster
Sequence 2:NP_998160.1 Gene:riok1 / 406268 ZFINID:ZDB-GENE-040426-1927 Length:552 Species:Danio rerio


Alignment Length:572 Identity:172/572 - (30%)
Similarity:269/572 - (47%) Gaps:135/572 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 DEGNVAEDIQLPEDSDAVIAQLLQSQFDHEYNEELRRIERQQNKQSKVTVTLNKFLRDGDAEFLH 147
            |:.:.:|.:..||...      |:::.|   ...|:.:|..:.|::                   
Zfish    10 DDADESESVISPEKPS------LENRLD---EVTLQSVENNKQKEN------------------- 46

  Fly   148 DTAEDDYEEDELEQQKHD--WDRFED-----NERQLDSIPRCGFKVNKEG------EMITKHDPQ 199
               |:||:|||.:....|  ||..|.     .:|.......|..:.|::.      :|.|..|..
Zfish    47 ---EEDYDEDEEDDDDDDDEWDWNESAGGDFTKRYTAMRTGCNPQANRQNSNNKSIKMSTPSDKV 108

  Fly   200 LCAVRNAQRVMSFPPEFPTGDAAGFDMKLSNKVF---NQLRAHSRRGRSDKHEKVATAEMGLDAG 261
            |....|...:          |...:...:.|||.   .|..|.:.|.: ||.:: ||.|..||..
Zfish   109 LRKFENKINL----------DKLSYADSVINKVTVMQKQREADTFRVK-DKSDR-ATVEQVLDPR 161

  Fly   262 TRLLLYKLINNQILEQINGIISTGKEAVILHANSDANYTGSNEHGHQSGVLVPPQLLPRECAIKI 326
            ||::|:|:::..:..||||.|||||||.:.||.     |...|                ..||||
Zfish   162 TRMILFKMLSRGVFSQINGCISTGKEANVYHAT-----TAKGE----------------SRAIKI 205

  Fly   327 FKTTLNEFKQRDRYIKDDYRFKDRFSKQNHRVIINMWAEKEMHNLMRMQAIGLNVPDVVVLKKHV 391
            :||::..||.||:|:..::||:..:.|.|.|.::..||||||.||:|:|...:..|:.::|:.||
Zfish   206 YKTSILLFKDRDKYVSGEFRFRHGYCKGNPRKMVRTWAEKEMRNLIRLQTAQIPSPEPIMLRSHV 270

  Fly   392 LVMRFIGDNHNAAPKLKDARLSDAELSCAYEEIVAAMHKLYNEAKLVHADMSEYNILWFEGKCWF 456
            |||.|||.:...||.||:|.||:::....|.:|:..|..:|:||:|||||:||||:|:..|:.:.
Zfish   271 LVMSFIGRDDTPAPLLKNAVLSESKARELYLQIIQNMRIMYSEARLVHADLSEYNMLYHNGEAYI 335

  Fly   457 IDVAQSVEPKHPSALEFLMRDCGNIVNFFERRGLPNIYTKEQLFEFIT-------GLNSEVHTAA 514
            |||:||||..||.|||||.:||.|:.:||:|..:. :.|..:||||:|       .:|..:..|.
Zfish   336 IDVSQSVEHDHPHALEFLRKDCSNVNDFFQRHNVA-VMTVRELFEFVTDPSITTDNINQYLDKAM 399

  Fly   515 QLEQIHTRGASISQATAPNQEECPDELKPLEYPFELAW------EKSQQDRAAQKALQQAQDNND 573
            ::         .|:.||   ||..|:.|..|..|:.|:      |.:..:|.....:::.:|.:.
Zfish   400 EI---------ASERTA---EERSDQDKVDEEVFKKAYIPRTLNEVTHYERDVDTMMKKKEDTSS 452

  Fly   574 NKTDTD----------------------------KDQET-DDNENDSDDKEK 596
            ..|:||                            ||:.: .:.|.|.||:||
Zfish   453 EDTNTDNILYQTVTGLRKDLSGVQTVPSILEDSTKDESSGSEEEEDEDDEEK 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3008NP_608871.1 RIO1 242..505 CDD:224632 113/269 (42%)
RIO3_euk 278..488 CDD:270697 93/209 (44%)
riok1NP_998160.1 RIO1 144..383 CDD:224632 112/262 (43%)
RIO1_euk 178..367 CDD:270698 93/209 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1718
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1238900at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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