DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cf2 and wdn

DIOPT Version :10

Sequence 1:NP_001350854.1 Gene:Cf2 / 33692 FlyBaseID:FBgn0000286 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_476900.1 Gene:wdn / 43398 FlyBaseID:FBgn0005642 Length:869 Species:Drosophila melanogaster


Alignment Length:414 Identity:96/414 - (23%)
Similarity:147/414 - (35%) Gaps:122/414 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 MRLTPEEQHHQQQLQAEHHHQQQHQQQQQQQQQQQELLEQQQREMQEQAQQQQVHHHQQDQDL-A 281
            ::|:||:.|            ||||.|..|.|    ||:::.:.....|.:.:|...:..::. .
  Fly   164 VKLSPEQLH------------QQHQLQMPQSQ----LLQRKPKLPAATAVRLKVFKEEPPEEKHP 212

  Fly   282 GDQVALKVPPLTVKLNKNANGGAIVSHPQVIIKEEPLSLSDSGDVVNSVPVYAIQANP--GVPAP 344
            .:||..||.....:|          ..|...|.::..|.....|..:..|..|.:..|  ..|||
  Fly   213 PEQVVTKVEVCESEL----------LPPSFTIFQQAKSAESVADAASMPPPAASETKPLEVDPAP 267

  Fly   345 A-----SSGVLVGTQTVPAD---LAHKIR----------------------------------HK 367
            .     .:|:|:.|....|.   .||::|                                  .|
  Fly   268 LHKCLDCNGLLLETPDEVAKHEAAAHRLRLTYRCSECQREFELLAGLKKHLKTHRTEGRKDTWKK 332

  Fly   368 CPDCPKTFKTPGTLAMHRKIH---------------------TGEADATPKERPYTC-------- 403
            ||||.|..|. |::.||||||                     |..|.....|:||.|        
  Fly   333 CPDCGKCLKL-GSMWMHRKIHSDNKKYQCDICGQKFVQKINLTHHARIHSSEKPYECPECQKRFQ 396

  Fly   404 ----------------SY----CGKSFTQSNTLKQHTRIHTGEKPFHCGYCEKSFSVKDYLTKHI 448
                            ||    |||.:.....||.|..:|..::||.|..|:|||.....|.:|.
  Fly   397 ERSHLQRHQKYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLEQRPFACTVCDKSFISNSKLKQHS 461

  Fly   449 RTHTGEKPYTCPYCDKRFTQRSALTVHTTKLHPLXGRPGGGRQLPVPAPAAPPPPTHPPNPSGPG 513
            ..|||.:|:.|.||.:.||.......||.:.|.:..:.|...: .:|:..:....|:....:...
  Fly   462 NIHTGMRPFKCNYCPRDFTNFPNWLKHTRRRHKVDHKTGEHLE-NIPSYCSKKSTTNKAQKAAAA 525

  Fly   514 APPPLSADTDTDPKKPSAAAAASA 537
            |....:|.:..:|.:.||::...|
  Fly   526 AAAAAAASSAVNPNELSASSELKA 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cf2NP_001350854.1 COG5048 <366..>473 CDD:227381 47/155 (30%)
C2H2 Zn finger 368..388 CDD:275368 11/19 (58%)
C2H2 Zn finger 403..423 CDD:275368 9/47 (19%)
C2H2 Zn finger 431..451 CDD:275368 7/19 (37%)
zf-H2C2_2 443..468 CDD:463886 10/24 (42%)
C2H2 Zn finger 459..480 CDD:275368 7/20 (35%)
wdnNP_476900.1 zf-C2HE <279..321 CDD:465082 5/41 (12%)
C2H2 Zn finger 301..321 CDD:275368 0/19 (0%)
C2H2 Zn finger 333..352 CDD:275368 11/19 (58%)
zf-C2H2 358..380 CDD:395048 2/21 (10%)
C2H2 Zn finger 360..380 CDD:275368 2/19 (11%)
zf-H2C2_2 376..395 CDD:463886 5/18 (28%)
zf-C2H2 386..408 CDD:395048 2/21 (10%)
C2H2 Zn finger 388..436 CDD:275368 9/47 (19%)
zf-H2C2_2 400..425 CDD:463886 5/24 (21%)
C2H2 Zn finger 416..433 CDD:275368 5/16 (31%)
SUF4-like 440..>507 CDD:411020 22/67 (33%)
C2H2 Zn finger 444..465 CDD:411020 7/20 (35%)
C2H2 Zn finger 444..464 CDD:275368 7/19 (37%)
zf-H2C2_2 457..481 CDD:463886 10/23 (43%)
C2H2 Zn finger 472..493 CDD:411020 7/20 (35%)
C2H2 Zn finger 472..493 CDD:275368 7/20 (35%)

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