DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cf2 and prg

DIOPT Version :9

Sequence 1:NP_001350854.1 Gene:Cf2 / 33692 FlyBaseID:FBgn0000286 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_001260253.1 Gene:prg / 34177 FlyBaseID:FBgn0285971 Length:558 Species:Drosophila melanogaster


Alignment Length:296 Identity:73/296 - (24%)
Similarity:109/296 - (36%) Gaps:98/296 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   253 ELLEQ--------QQRE--MQEQAQQQQVHHHQQDQDLAGDQVALKVPPLTVKLNKNANGGAIVS 307
            |:||:        |:||  :|||.::....|.:....|                  |.|.|..|.
  Fly    72 EILEEAFELRKGMQEREQSLQEQLKEMIKDHPKHRPGL------------------NGNPGVFVP 118

  Fly   308 HPQVII-----------KEEPLSLSDSGDVVN--------------------------SVPV--- 332
            ....||           .||..:|...|:..|                          .:|:   
  Fly   119 EEGCIIVEVDPENLAESSEEEFALGSDGEYENYDDDDEEEEEDYDEEDEEDGQNGEDVDMPLGMD 183

  Fly   333 ---------YAIQANPGVPAPASSGVL----VGTQTVPADL-AHKIRHKCPDCP--------KTF 375
                     .|..||.....|..:.:.    :|. |:||:. .|::....|:.|        |..
  Fly   184 AAQMAAQQSVANNANTTEARPKRAFLCQYCDLGF-TLPAECQEHELAAHDPNAPYCCNFCNIKLV 247

  Fly   376 KTPGTLAMHRKIHTGEADATPKERPYTCSYCGKSFTQSNTLKQHTRIHTGEKPFHCGYCEKSFSV 440
            ..|..::..:.:|       ..:|||.|::|.|.|.:.:.||:||.:|||.:||.|..|.||||.
  Fly   248 TRPALISHIKTLH-------DPDRPYVCAHCRKGFVRRSDLKKHTIVHTGVRPFTCNVCSKSFSR 305

  Fly   441 KDYLTKHIRTHTGEKPYTCPYCDKRFTQRSALTVHT 476
            ...||||:|.|:|.||:.|..|.:.|.....:..||
  Fly   306 NTNLTKHMRIHSGVKPFVCQQCPRSFQTAVEMMRHT 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cf2NP_001350854.1 COG5048 <366..>473 CDD:227381 39/114 (34%)
C2H2 Zn finger 368..388 CDD:275368 4/27 (15%)
C2H2 Zn finger 403..423 CDD:275368 8/19 (42%)
C2H2 Zn finger 431..451 CDD:275368 11/19 (58%)
zf-H2C2_2 443..468 CDD:316026 12/24 (50%)
C2H2 Zn finger 459..480 CDD:275368 5/18 (28%)
prgNP_001260253.1 zf-AD 16..94 CDD:285071 7/21 (33%)
COG5048 <212..340 CDD:227381 44/135 (33%)
C2H2 Zn finger 239..260 CDD:275368 2/20 (10%)
C2H2 Zn finger 268..288 CDD:275368 8/19 (42%)
zf-H2C2_2 280..305 CDD:290200 14/24 (58%)
zf-C2H2 294..316 CDD:278523 12/21 (57%)
C2H2 Zn finger 296..316 CDD:275368 11/19 (58%)
zf-H2C2_2 308..331 CDD:290200 11/22 (50%)
C2H2 Zn finger 324..344 CDD:275368 5/18 (28%)
C2H2 Zn finger 352..372 CDD:275368
C2H2 Zn finger 416..436 CDD:275368
C2H2 Zn finger 443..464 CDD:275368
C2H2 Zn finger 470..490 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24388
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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