DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cf2 and Patz1

DIOPT Version :10

Sequence 1:NP_001350854.1 Gene:Cf2 / 33692 FlyBaseID:FBgn0000286 Length:537 Species:Drosophila melanogaster
Sequence 2:XP_006251354.1 Gene:Patz1 / 305471 RGDID:1308337 Length:687 Species:Rattus norvegicus


Alignment Length:111 Identity:40/111 - (36%)
Similarity:54/111 - (48%) Gaps:10/111 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   368 CPDCPKTFKTPGTLAMHRKIHTGEADATPKERPYTCSYCGKSFTQSNTLKQHTRIHTGE--KPFH 430
            |..|.|.|:....|..|:..|:|       |:||:|..||..|.:.:.:..|.|.|.|.  ||:.
  Rat   357 CEICGKIFRDVYHLNRHKLSHSG-------EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 414

  Fly   431 CGYCEKSFSVKDYLTKHIR-THTGEKPYTCPYCDKRFTQRSALTVH 475
            |..|.|.||..|:|..||: .||.|:|:.|..|:..|..|..|..|
  Rat   415 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQTCNASFATRDRLRSH 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cf2NP_001350854.1 COG5048 <366..>473 CDD:227381 38/107 (36%)
C2H2 Zn finger 368..388 CDD:275368 6/19 (32%)
C2H2 Zn finger 403..423 CDD:275368 6/19 (32%)
C2H2 Zn finger 431..451 CDD:275368 9/20 (45%)
zf-H2C2_2 443..468 CDD:463886 10/25 (40%)
C2H2 Zn finger 459..480 CDD:275368 6/17 (35%)
Patz1XP_006251354.1 BTB_POZ_ZBTB19_PATZ1 14..162 CDD:349516
C2H2 Zn finger 294..314 CDD:275368
C2H2 Zn finger 357..377 CDD:275368 6/19 (32%)
zf-C2H2 357..377 CDD:395048 6/19 (32%)
zf-H2C2_2 369..394 CDD:463886 11/31 (35%)
COG5048 <381..518 CDD:227381 31/80 (39%)
C2H2 Zn finger 385..405 CDD:275368 6/19 (32%)
C2H2 Zn finger 415..433 CDD:275368 8/17 (47%)
C2H2 Zn finger 444..464 CDD:275368 6/17 (35%)
C2H2 Zn finger 497..517 CDD:275368
zf-C2H2_assoc3 535..604 CDD:465210
C2H2 Zn finger 607..628 CDD:275370
Blue background indicates that the domain is not in the aligned region.

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