DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cf2 and Scrt1

DIOPT Version :10

Sequence 1:NP_001350854.1 Gene:Cf2 / 33692 FlyBaseID:FBgn0000286 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_570963.1 Gene:Scrt1 / 170729 MGIID:2176606 Length:348 Species:Mus musculus


Alignment Length:240 Identity:65/240 - (27%)
Similarity:88/240 - (36%) Gaps:55/240 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 NANGGAIVSHPQVIIKEEPLSLSDSGDVVNSVPVYAIQANPGVPAPASSGVLVGTQTVPADLAHK 363
            |||..|..|...|...:     ||:|.          ...||.....|.....|...|.|....:
Mouse   130 NANAAAAPSTASVAAPD-----SDAGG----------GGGPGTRGSGSGSASRGGTRVGAGTEAR 179

  Fly   364 I---------RHKCPDCPKTFKTPGTLAMHRKIHTGEADATPKERP------------------- 400
            .         ||.|.:|.||:.|...|:.|::.|........:..|                   
Mouse   180 AGSGATGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMHLLTH 244

  Fly   401 ---YTCSYCGKSFTQSNTLKQHTRIHTGEKPFHCGYCEKSFSVKDYLTKHIRTHTGEKPYTCPYC 462
               :.|..|||:|::...|:.|.|.|||||||.|.:|.|:|:.:..|..|::||:..|.:.|..|
Mouse   245 DLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHFQCKRC 309

  Fly   463 DKRFTQRSALTVHTTKLHPLXGRPGGGRQLPVPAPAAPPPPTHPP 507
            .|.|..:|.|..|........|..|         ||.|.||...|
Mouse   310 KKSFALKSYLNKHYESACFKGGASG---------PATPAPPQLSP 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cf2NP_001350854.1 COG5048 <366..>473 CDD:227381 39/128 (30%)
C2H2 Zn finger 368..388 CDD:275368 7/19 (37%)
C2H2 Zn finger 403..423 CDD:275368 8/19 (42%)
C2H2 Zn finger 431..451 CDD:275368 6/19 (32%)
zf-H2C2_2 443..468 CDD:463886 9/24 (38%)
C2H2 Zn finger 459..480 CDD:275368 7/20 (35%)
Scrt1NP_570963.1 SNAG domain. /evidence=ECO:0000250 1..20
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 130..190 15/74 (20%)
C2H2 Zn finger 193..213 CDD:275368 7/19 (37%)
C2H2 Zn finger 224..241 CDD:275371 1/16 (6%)
COG5048 <245..>313 CDD:227381 27/67 (40%)
C2H2 Zn finger 250..270 CDD:275368 8/19 (42%)
C2H2 Zn finger 278..298 CDD:275368 6/19 (32%)
C2H2 Zn finger 306..322 CDD:275368 6/15 (40%)
Blue background indicates that the domain is not in the aligned region.

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