DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cf2 and si:ch211-142b24.6

DIOPT Version :10

Sequence 1:NP_001350854.1 Gene:Cf2 / 33692 FlyBaseID:FBgn0000286 Length:537 Species:Drosophila melanogaster
Sequence 2:XP_017211059.1 Gene:si:ch211-142b24.6 / 103910622 ZFINID:ZDB-GENE-141212-227 Length:429 Species:Danio rerio


Alignment Length:284 Identity:87/284 - (30%)
Similarity:126/284 - (44%) Gaps:66/284 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 QQQQQQQQQELLEQQQREMQEQAQQQQVHHHQQDQD---LAGDQVALKV--------PPLTVKLN 297
            :|:..|:|.:|::..:...:|:       ||.:.:|   |..|.| |||        .|....| 
Zfish    20 KQEDLQEQTDLIKDYEESKEEE-------HHVKIEDKTHLETDGV-LKVRDKSCFTCTPCDKSL- 75

  Fly   298 KNANGGAIVSHPQVIIKEEPLSLSDSGDV--------------VNSVPVYAIQANPGVPAPAS-- 346
              |:...:.:|.::...|:|.:.:..|..              ....|....|........:|  
Zfish    76 --ASKSKLKTHMRIHTGEKPFTCTQCGKSFSQSSHLNKHMRIHTGEKPFTCTQCGKSFSKSSSLY 138

  Fly   347 SGVLVGTQTVPADLAH---KIRHK-----------------CPDCPKTFKTPGTLAMHRKIHTGE 391
            ..:.:.|...|....|   ...|.                 ||.|.|:|....:|..|.||||| 
Zfish   139 RHMKIHTGEKPFTCTHCGKSFNHSSFLNLHMRIHTGEKPLTCPQCGKSFSKSSSLYRHMKIHTG- 202

  Fly   392 ADATPKERPYTCSYCGKSFTQSNTLKQHTRIHTGEKPFHCGYCEKSFSVKDYLTKHIRTHTGEKP 456
                  |:|:||:.|||||:.|::|.:|.|||||||||.|..|.||||:...||:|:|.||||||
Zfish   203 ------EKPFTCTQCGKSFSCSSSLNKHMRIHTGEKPFTCTQCGKSFSLSTSLTQHMRIHTGEKP 261

  Fly   457 YTCPYCDKRFTQRSALTVHTTKLH 480
            :|||.|.|.|:..|:|..| .::|
Zfish   262 FTCPQCRKSFSHSSSLHQH-MRIH 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cf2NP_001350854.1 COG5048 <366..>473 CDD:227381 57/123 (46%)
C2H2 Zn finger 368..388 CDD:275368 8/19 (42%)
C2H2 Zn finger 403..423 CDD:275368 10/19 (53%)
C2H2 Zn finger 431..451 CDD:275368 10/19 (53%)
zf-H2C2_2 443..468 CDD:463886 16/24 (67%)
C2H2 Zn finger 459..480 CDD:275368 8/20 (40%)
si:ch211-142b24.6XP_017211059.1 C2H2 Zn finger 68..88 CDD:275368 4/22 (18%)
COG5048 92..424 CDD:227381 68/201 (34%)
C2H2 Zn finger 96..116 CDD:275368 1/19 (5%)
C2H2 Zn finger 124..144 CDD:275368 2/19 (11%)
C2H2 Zn finger 152..172 CDD:275368 2/19 (11%)
C2H2 Zn finger 180..200 CDD:275368 8/19 (42%)
C2H2 Zn finger 208..228 CDD:275368 10/19 (53%)
C2H2 Zn finger 236..256 CDD:275368 10/19 (53%)
C2H2 Zn finger 264..284 CDD:275368 8/20 (40%)
C2H2 Zn finger 292..312 CDD:275368
C2H2 Zn finger 320..340 CDD:275368
C2H2 Zn finger 348..368 CDD:275368
C2H2 Zn finger 376..396 CDD:275368
C2H2 Zn finger 404..424 CDD:275368
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.