DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cf2 and si:ch211-229l10.11

DIOPT Version :10

Sequence 1:NP_001350854.1 Gene:Cf2 / 33692 FlyBaseID:FBgn0000286 Length:537 Species:Drosophila melanogaster
Sequence 2:XP_068076028.1 Gene:si:ch211-229l10.11 / 103910550 ZFINID:ZDB-GENE-110913-131 Length:429 Species:Danio rerio


Alignment Length:271 Identity:83/271 - (30%)
Similarity:124/271 - (45%) Gaps:68/271 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 QQQQQQQQQELLEQQQREMQEQAQQQQVHH-------HQQDQDL-------------AGDQVA-- 286
            :|:...:|.:|.::.:|..:|:      ||       |.:..|:             .|..:|  
Zfish    20 KQEDLHEQTDLFKEYERSKEEE------HHVKIEDKTHLETDDILKMRDKRCFTCNQCGKSLANK 78

  Fly   287 --LKVPP---------LTVKLNKNANGGA-IVSHPQVIIKEEPLSLSDSGDVVNSVPVYAIQANP 339
              ||:..         ...:..||.|..: :..|.::...|:|.:.:..|      ..::..|| 
Zfish    79 SKLKIHMRVHNREKLFTCTQCGKNFNQSSHLNQHMRIHTGEKPFTCTQCG------KSFSYSAN- 136

  Fly   340 GVPAPASSGVLVGTQTVPADLAHKIRHKCPDCPKTFKTPGTLAMHRKIHTGEADATPKERPYTCS 404
                 .:..:.:.|...|        ..|..|.|:|.....|..|.:||||       |:|:||:
Zfish   137 -----LNQHMRIHTGEKP--------FTCTQCGKSFSNSANLNQHMRIHTG-------EKPFTCT 181

  Fly   405 YCGKSFTQSNTLKQHTRIHTGEKPFHCGYCEKSFSVKDYLTKHIRTHTGEKPYTCPYCDKRFTQR 469
            .|||||:||:.|.||.|||||||||.|..|.||||...||.:|:|.||||||:||..|.|.|:|.
Zfish   182 QCGKSFSQSSYLNQHMRIHTGEKPFTCTQCGKSFSQSPYLNQHMRIHTGEKPFTCSQCGKSFSQS 246

  Fly   470 SALTVHTTKLH 480
            |:|.:| .::|
Zfish   247 SSLYLH-MRIH 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cf2NP_001350854.1 COG5048 <366..>473 CDD:227381 56/106 (53%)
C2H2 Zn finger 368..388 CDD:275368 6/19 (32%)
C2H2 Zn finger 403..423 CDD:275368 12/19 (63%)
C2H2 Zn finger 431..451 CDD:275368 10/19 (53%)
zf-H2C2_2 443..468 CDD:463886 15/24 (63%)
C2H2 Zn finger 459..480 CDD:275368 8/20 (40%)
si:ch211-229l10.11XP_068076028.1 C2H2 Zn finger 68..88 CDD:275368 4/19 (21%)
COG5048 96..424 CDD:227381 70/189 (37%)
C2H2 Zn finger 96..116 CDD:275368 4/19 (21%)
C2H2 Zn finger 124..144 CDD:275368 3/31 (10%)
C2H2 Zn finger 152..172 CDD:275368 6/19 (32%)
C2H2 Zn finger 180..200 CDD:275368 12/19 (63%)
C2H2 Zn finger 208..228 CDD:275368 10/19 (53%)
C2H2 Zn finger 236..256 CDD:275368 8/20 (40%)
C2H2 Zn finger 264..284 CDD:275368
C2H2 Zn finger 292..312 CDD:275368
C2H2 Zn finger 320..340 CDD:275368
C2H2 Zn finger 348..368 CDD:275368
C2H2 Zn finger 404..424 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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