DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mRpS2 and Mrps2

DIOPT Version :9

Sequence 1:NP_523473.2 Gene:mRpS2 / 33688 FlyBaseID:FBgn0031639 Length:264 Species:Drosophila melanogaster
Sequence 2:XP_006233894.1 Gene:Mrps2 / 362094 RGDID:1309116 Length:300 Species:Rattus norvegicus


Alignment Length:218 Identity:124/218 - (56%)
Similarity:156/218 - (71%) Gaps:2/218 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 LKHPDYFQVHNLFTVRDLFNARVHYGHKEGSLDDRMRPYLFGSRLGHLIFDLDKTASHLRDALNF 110
            |:|.|:|.|..||:|:.||.||||.|||.|.....|.||:||:|||..|.|||:||.:|:.||||
  Rat    73 LQHSDFFNVKELFSVKSLFEARVHLGHKAGCRHRFMEPYIFGNRLGQDIIDLDQTALNLQLALNF 137

  Fly   111 AAHIAFRDGIILFFNRNAMNSHLVERKAQEAGEFSHTRFWRGGIFTNANVQFDAVTRLPDLCIFL 175
            .||:|:|.|||||.:||...|||:|..||..||::|||:::||:.|||.:.|....|||||.:||
  Rat   138 TAHVAYRKGIILFVSRNRQFSHLIETTAQACGEYAHTRYFKGGLLTNAQLLFGPTVRLPDLIVFL 202

  Fly   176 NTQNNVMAQHTAVRDAAKMAIPTIGIVDSNCNPNLITYPVPGNDDSPAAVELYCNLFKEAILRGK 240
            :|.|||...|.||||||||.|||:||||:||||.|||||:|||||||.|::|:|.||:..|.|.|
  Rat   203 HTLNNVFESHVAVRDAAKMNIPTVGIVDTNCNPCLITYPIPGNDDSPQAIQLFCKLFRTTINRAK 267

  Fly   241 RERRQLLGLPPLDESQPRRSRKT 263
            .:|||:..|..|  ..|:.|..|
  Rat   268 EKRRQMEALHRL--QSPKGSEGT 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpS2NP_523473.2 RPS2 63..238 CDD:100106 106/174 (61%)
Mrps2XP_006233894.1 RPS2 90..265 CDD:100106 106/174 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166346521
Domainoid 1 1.000 118 1.000 Domainoid score I5736
eggNOG 1 0.900 - - E1_COG0052
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H99837
Inparanoid 1 1.050 257 1.000 Inparanoid score I3075
OMA 1 1.010 - - QHG62495
OrthoDB 1 1.010 - - D437653at33208
OrthoFinder 1 1.000 - - FOG0002724
OrthoInspector 1 1.000 - - oto95563
orthoMCL 1 0.900 - - OOG6_101759
Panther 1 1.100 - - LDO PTHR12534
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3526
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

Return to query results.
Submit another query.