DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir25a and GLR2.5

DIOPT Version :10

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_001332219.1 Gene:GLR2.5 / 830991 AraportID:AT5G11210 Length:918 Species:Arabidopsis thaliana


Alignment Length:1018 Identity:202/1018 - (19%)
Similarity:371/1018 - (36%) Gaps:267/1018 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LWLLGFLSLL---SSFSLEIAAQTTQNINVLFINEVDNEPAAKAVEVVLTYLKKNIRYGLSVQLD 73
            ||||.||..|   ...|.:.|.|....| ||..|....:.:.:|:.:.|:.. .|...|...:  
plant    14 LWLLIFLVFLVLSLGKSQKEALQVKVGI-VLGSNVTLADLSLRAINMSLSEF-YNTHNGFKTR-- 74

  Fly    74 SIEANKSDAKVLLEAICNKYATSIEKKQTPHLILDTTKSGIASETVKSFTQALG----LPTISAS 134
             |..|..|:|..:..........|:|::...:|      |..:.....|...||    :|.|  |
plant    75 -IVLNVRDSKQTVVGAAASALYLIKKREVVAII------GPGTSMQAPFLINLGNQSKVPII--S 130

  Fly   135 YGQQGDLRQWRDLDEAKQKYLLQVMPPADIIPEAIRSIVIHMNITNAAILY-DDSF-------VM 191
            :.....|     ||..:..|.::.........:||.:|:..........:| |:.|       ::
plant   131 FSATSPL-----LDSLRSPYFIRATHDDSSQVQAISAIIESFRWREVVPIYVDNEFGEGILPNLV 190

  Fly   192 DHKYKSLLQNIQTRHVITAIAKDGKREREEQIEKLRNLDINNFFI-----LGT-LQSIRMVLESV 250
            | .::.:...|:.|..|:....|.:.::|  :.||..:....|.:     ||: |.||...::.:
plant   191 D-AFQEINVRIRYRSAISLHYSDDQIKKE--LYKLMTMPTRVFIVHMLPDLGSRLFSIAKEIDML 252

  Fly   251 KPAYFERNFAWHAITQNEGEISSQRDNATIMFM-------------KPMAY--TQYRDRLGLLRT 300
            ...|     .| .:|....::.|....::::.|             |.:.:  .:::.|.|    
plant   253 SKGY-----VW-IVTNGIADLMSIMGESSLVNMHGVLGVKTYFAKSKELLHLEARWQKRFG---- 307

  Fly   301 TYNLNEEPQLSSAFYFDLALRSFLTIKEMLQSGAWPKDMEYLNCDDFQGGNTPQRNLDLRDYFT- 364
                .||....:.:.:|.|....::::|          :.::|    ...||.:.:....|..| 
plant   308 ----GEELNNFACWAYDAATALAMSVEE----------IRHVN----MSFNTTKEDTSRDDIGTD 354

  Fly   365 -----------KITEPTSYGTFDLVTQSTQPFNGHSFMKFEMDINVLQIRGGSSVNSKSIGKWIS 418
                       |:.:..|..:|..|....|..||      :::....:|........:::|.|.|
plant   355 LDELGVALSGPKLLDALSTVSFKGVAGRFQLKNG------KLEATTFKIINIEESGERTVGFWKS 413

  Fly   419 --GLNSELIVKDEEQMKNLTADTVYRIFTVVQAPFIMRDET--APKGYK---------------- 463
              ||           :|:|..|.|......:: |.|...:|  .|||::                
plant   414 KVGL-----------VKSLRVDKVSHSSRRLR-PIIWPGDTIFVPKGWEFPTNAKKLRIAVPKKD 466

  Fly   464 --------------------GYCIDLINEIAA----IVHFDYTIQEVEDGKFGNMDENGQWNGIV 504
                                |:|||:.|.:.:    .|.::|...:..|||     ..|.::.:|
plant   467 GFNNFVEVTKDENTNVPTVTGFCIDVFNTVMSQMPYAVSYEYIPFDTPDGK-----PRGSYDEMV 526

  Fly   505 KKLMDKQADIGLGSMSVMAEREIVIDFTVPYYDLVGITIMMQRPSSPSSLFKFLTVLETNVWLCI 569
            ..:...:.|..:|..:::|.|...:||.:||.:...:.::..:.......:.||..|...:||..
plant   527 YNVFLGEFDGAVGDTTILANRSHYVDFALPYSETGIVFLVPVKDGKEKGEWVFLKPLTKELWLVT 591

  Fly   570 LAAYFFTSFLMWIFDRWSPYSYQNNREKYKDDEEKRE----FNLKECLWFCMTSL-----TPQGG 625
            .|::.:...::|||:             |:.|||.||    ..:....:|..::|     .|.  
plant   592 AASFLYIGIMVWIFE-------------YQADEEFREQMIIDKISSVFYFSFSTLFFAHRRPS-- 641

  Fly   626 GEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPVESLDDLAKQ-YKILYAPLNGS 689
                ::...|::...|.....|:..||||.|.:.|||..|...|..:|||.|. ..|.|.  .||
plant   642 ----ESFFTRVLVVVWCFVLLILTQSYTATLTSMLTVQELRPTVRHMDDLRKSGVNIGYQ--TGS 700

  Fly   690 SAMTYFERMSNIEQMFYEIWKDLSLNDSLTAVERSKLAVWDYPVSDKYTKMWQAMQEAKLPATLD 754
            ..   |||   ::||.:               :.|:|..::.|         :.|:|..|.    
plant   701 FT---FER---LKQMRF---------------DESRLKTYNSP---------EEMRELFLH---- 731

  Fly   755 EAVARVRNSTAATGFAFLGDATDIRYLQL---TNC-DLQVVGEEFSRKPYAIAVQQGSHLKDQFN 815
                  ::|......||    .::.|::|   ..| :..::...|....:..|...||.|....:
plant   732 ------KSSNGGIDAAF----DEVAYIKLFMAKYCSEYSIIEPTFKADGFGFAFPLGSPLVSDIS 786

  Fly   816 NAILTLLNKRQLEKLKEKWWKNDEALAKC------DKPEDQSDGISIQNIGGVFIVIFVGIGMAC 874
            ..||.:.....::.::.||:..::   .|      |.| .|.|..|.:   .:|:::|| :.:..
plant   787 RQILNITEGDAMKAIENKWFLGEK---HCLDSTTSDSP-IQLDHHSFE---ALFLIVFV-VSVIL 843

  Fly   875 ITLVFEYWWYRYRK---NPRIIDVAEANA------ERSNAADH 908
            :.|:.....|:.|:   :|.:.: .:|||      |..|..||
plant   844 LLLMLASRGYQERQHNASPNLPN-DQANAAQEEVNEEGNVGDH 885

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 37..418 CDD:380606 73/425 (17%)
PBP2_iGluR_putative 438..836 CDD:270435 93/453 (21%)
GLR2.5NP_001332219.1 PBP1_GABAb_receptor_plant 38..421 CDD:380645 78/448 (17%)
GluR_Plant 456..806 CDD:270404 84/419 (20%)
Lig_chan 584..838 CDD:459656 69/325 (21%)

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