DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir25a and GLR3.6

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_001326369.1 Gene:GLR3.6 / 824311 AraportID:AT3G51480 Length:903 Species:Arabidopsis thaliana


Alignment Length:1016 Identity:208/1016 - (20%)
Similarity:362/1016 - (35%) Gaps:283/1016 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LMNPKTSKILW----LLGFLSLLSSFSLEIAAQTTQNINVLFINEVDNEPAAKAVEVVLTYLKKN 63
            ::|..|.:|:.    ..||:|::...      |..::..|..|.. .....|:.|..|.|.||  
plant    63 ILNTTTLRIIMHDTKYNGFMSIMEPL------QFMESETVAIIGP-QRSTTARVVAHVATELK-- 118

  Fly    64 IRYGLSVQLDSIEANKSDAKVLLEAICNKYATSIEKKQTPHLILDTTKSGIASETVKSFTQALGL 128
                  :.:.|..|.......|               |.|..|..:.........:....|..|.
plant   119 ------IPILSFSATDPTMSPL---------------QFPFFIRTSQNDLFQMAAIADIVQFYGW 162

  Fly   129 PTISA-----SYGQQGDLRQWRDLDEAKQKYLLQ-VMPPADIIPEAIRSIVIHMNITNAAIL-YD 186
            ..:.|     .||:.|.......|.|.:.:...: .:|||. ..|.|..::|.:.::.:.|: ..
plant   163 REVVAIYGDDDYGRNGVAALGDRLSEKRCRISYKAALPPAP-TRENITDLLIKVALSESRIIVVH 226

  Fly   187 DSFVMDHKYKSLLQN----------IQTRHVITAIAKDGKREREEQIEKLRNLD-INNFFILGTL 240
            .||:...:..::.:|          |.|..:.|.|..|....          || |||      :
plant   227 ASFIWGLELFNVARNLGMMSTGYVWIATNWLSTIIDTDSPLP----------LDTINN------I 275

  Fly   241 QSIRMVLESVKPAYFERNFA--WHAITQNEGEISSQRDNATIMFMKPMAYTQYRDRLGLLRTTYN 303
            |.:..:......:..::||.  ||.:|                            .:||  :|| 
plant   276 QGVITLRLHTPNSIMKQNFVQRWHNLT----------------------------HVGL--STY- 309

  Fly   304 LNEEPQLSSAFYFDLALRSFLTIKEMLQSGAWPKDMEYLNCDDF--QGGNTPQRNLDLRDYFTKI 366
                           ||.::.|:..:.|:           .|||  :|||..         |:|.
plant   310 ---------------ALYAYDTVWLLAQA-----------IDDFFKKGGNVS---------FSKN 339

  Fly   367 TEPTSYGTFDLVTQSTQPFNGHSF----------------MKFEMDIN-------VLQIRGGSSV 408
            ...:..|..:|...:.:.|:|...                |||..|.|       ||.:.|   .
plant   340 PIISELGGGNLHLDALKVFDGGKIFLESILQVDRIGLTGRMKFTSDRNLVNPAFDVLNVIG---T 401

  Fly   409 NSKSIGKWISGLNSELIVKDEEQMKNLTADTVYRIFTVVQAPFIMRDETAPKGY----------- 462
            ...:||.|.:  :|.|.|...::|:| |:.:..::.:||.....::   .|:|:           
plant   402 GYTTIGYWFN--HSGLSVMPADEMEN-TSFSGQKLHSVVWPGHSIK---IPRGWVFSNNGRHLRI 460

  Fly   463 --------------------KGYCIDLINEIAAIVHFDYTIQEVEDGKFGNMDENGQWNGIVKKL 507
                                .|:|:|:.  ||||....|.: ..|...|||..:|...:.:|:.:
plant   461 GVPNRYRFEEVVSVKSNGMITGFCVDVF--IAAINLLPYAV-PFELVAFGNGHDNPSNSELVRLI 522

  Fly   508 MDKQADIGLGSMSVMAEREIVIDFTVPYYDLVGITIMMQRPSSPSSLFKFLTVLETNVWLCILAA 572
            .....|.|:|.::::.||..:.|||.||.: .|:.::.......||...||......:||...|:
plant   523 TTGVYDAGVGDITIITERTKMADFTQPYVE-SGLVVVAPVRKLGSSAMAFLRPFTPQMWLIAAAS 586

  Fly   573 YFFTSFLMWIFDRWSPYSYQNNREKYKDDEEKREFNLKECL---WFCMTSLTPQGGGEAPKNLSG 634
            :.....::|..:             :|.::|.|....::.:   ||..::|..........|| |
plant   587 FLIVGAVIWCLE-------------HKHNDEFRGPPRRQVITTFWFSFSTLFFSHRETTTSNL-G 637

  Fly   635 RLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPVESLDDLAKQYKILYAPLNGSSAMTYFERMS 699
            |:|...|.....||.:||||:|.:.|||.:|.:|::.::.|...:..:..| .||....|.....
plant   638 RIVLIIWLFVVLIINSSYTASLTSILTVHQLSSPIKGIETLQTNHDPIGYP-QGSFVRDYLIHEL 701

  Fly   700 NIEQMFYEIWKDLSLNDSLTAVERSKLAVWDYPVSDKYTKMWQAMQEAKLPATLDEAVARVRNST 764
            ||.                  |.|                    :...:.|...|:|   :|:..
plant   702 NIH------------------VSR--------------------LVPLRSPEEYDKA---LRDGP 725

  Fly   765 AATGFAFLGDATDIRYLQLTN-CDLQVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLE 828
            ...|.|.:.|......|.|:| |:..:||:||::..:..|..:.|.|....:.|||.|.....::
plant   726 GKGGVAAVVDERAYIELFLSNRCEFGIVGQEFTKNGWGFAFPRNSPLAVDVSAAILQLSENGDMQ 790

  Fly   829 KLKEKWWKNDEALAKC---DKPEDQSDGISIQNIGGVFIVIFVGIGMACITLVFEYWWYRYRK-N 889
            ::::||     .|.|.   ...|.:.|.:.:::..|:|:|    .|:||:..:..|.....|: .
plant   791 RIRDKW-----LLRKACSLQGAEIEVDRLELKSFWGLFVV----CGVACVLALAVYTVLMIRQFG 846

  Fly   890 PRIIDVAEANAERSNAADHPGKLVDGVILGHSGEKFEKSKA 930
            .:..:.||.:..|.::   |...:.. .|....||.|.:||
plant   847 QQCPEEAEGSIRRRSS---PSARIHS-FLSFVKEKEEDAKA 883

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 80/430 (19%)
PBP2_iGluR_putative 438..836 CDD:270435 94/432 (22%)
Lig_chan 565..870 CDD:278489 68/311 (22%)
GLR3.6NP_001326369.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.910

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