DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir25a and GLR3.5

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_001324013.1 Gene:GLR3.5 / 817800 AraportID:AT2G32390 Length:953 Species:Arabidopsis thaliana


Alignment Length:1061 Identity:216/1061 - (20%)
Similarity:387/1061 - (36%) Gaps:298/1061 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LWLL--------GFLSLLSSFSLEIAAQTTQNINVLFINEVDNEPAAK-----AVEVVLTYLKKN 63
            ||:|        .|....||.||    .::.|:..||..:.....|||     |:|.:  ...::
plant    22 LWVLPIQGAGRESFSRNSSSSSL----PSSVNVGALFTYDSFIGRAAKLAFVAAIEDI--NADQS 80

  Fly    64 IRYGLSVQLDSIEANKS------DAKVLLEAICNKYATSI--EKKQTPHLILDTTKSGIASE--- 117
            |..|..:.:...:.|.|      .|..|:|   ||...:|  :.....|:|     |.:|:|   
plant    81 ILRGTKLNIVFQDTNCSGFVGTMGALQLME---NKVVAAIGPQSSGIGHII-----SHVANELHV 137

  Fly   118 ----------TVKSFTQALGLPTISASYGQQGDLR------QWRDL------DE----------- 149
                      |:.|......|.|....|.|...:.      :||::      ||           
plant   138 PFLSFAATDPTLSSLQYPYFLRTTQNDYFQMNAITDFVSYFRWREVVAIFVDDEYGRNGISVLGD 202

  Fly   150 ------AKQKYLLQVMPPAD--IIPEAIRSI--------VIHMN--------------------- 177
                  ||..|.....|.||  .|.:.:.|:        |:|:|                     
plant   203 ALAKKRAKISYKAAFPPGADNSSISDLLASVNLMESRIFVVHVNPDSGLNIFSVAKSLGMMGSGY 267

  Fly   178 --ITNAAIL--YDDSFVMDHKYKSLLQNIQT-RHVITAIAKDGKRE---REEQI---EKLRNLDI 231
              ||...:|  .|....:|.:...|||.:.. ||...  ..|.||:   |.:.:   |.|::.|.
plant   268 VWITTDWLLTALDSMEPLDPRALDLLQGVVAFRHYTP--ESDNKRQFKGRWKNLRFKESLKSDDG 330

  Fly   232 NNFFILGTLQSIRMVLESVKPAYFERNFAWHAIT-QNEGEISSQRD-----------NATIMFMK 284
            .|.:.|....|:.:|..::...:.:.|    .:| .|:..:.:..|           |....|::
plant   331 FNSYALYAYDSVWLVARALDVFFSQGN----TVTFSNDPSLRNTNDSGIKLSKLHIFNEGERFLQ 391

  Fly   285 PMAYTQYRDRLGLLRTTYNLNEEPQLSSAFYFDLALRSFLTIKEM--LQSGAWPKDMEYLNCDDF 347
            .:....|....|.:.  :| :|:.:::.|:       ..|.||..  |:.|.|            
plant   392 VILEMNYTGLTGQIE--FN-SEKNRINPAY-------DILNIKSTGPLRVGYW------------ 434

  Fly   348 QGGNTPQRNLDLRDYFTKITEPTSYGTFDLVTQSTQPFNGHSFMKFEMDINVLQIRGGSSVNSKS 412
                               :..|.:......|..::|.|..:     .|..:.:|.....|....
plant   435 -------------------SNHTGFSVAPPETLYSKPSNTSA-----KDQRLNEIIWPGEVIKPP 475

  Fly   413 IGKWI---SGLNSELIVKDEEQMKNLTADTVYRIFTVVQAPFIMRDETAPKGYKGYCIDLINEIA 474
            .| |:   :|...::.|.:....||                :..:|:. |.|.||:|||:..  |
plant   476 RG-WVFPENGKPLKIGVPNRVSYKN----------------YASKDKN-PLGVKGFCIDIFE--A 520

  Fly   475 AIVHFDYTIQEV----EDGKFGNMDENGQWNGIVKKLMDKQADIGLGSMSVMAEREIVIDFTVPY 535
            ||....|.:...    .|||     :|..::.::.::.....|:.:|.::::..|...:|||.|:
plant   521 AIQLLPYPVPRTYILYGDGK-----KNPSYDNLISEVAANIFDVAVGDVTIITNRTKFVDFTQPF 580

  Fly   536 YDLVGITIMMQRPSSPSSLFKFLTVLETNVWLCILAAYFFTSFLMWIFDRWSPYSYQNNREKYKD 600
            .: .|:.::.....:.||.:.||......:|....|.:.|...::||.:       ....|:::.
plant   581 IE-SGLVVVAPVKGAKSSPWSFLKPFTIEMWAVTGALFLFVGAVIWILE-------HRFNEEFRG 637

  Fly   601 DEEKREFNLKECLWFCMTSLTPQGGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRL 665
            ...::...:   .||..:::...........| ||.|...|.....||.:||||:|.:.|||.:|
plant   638 PPRRQIITV---FWFSFSTMFFSHRENTVSTL-GRFVLLVWLFVVLIINSSYTASLTSILTVQQL 698

  Fly   666 DTPVESLDDLAKQYKILYAPL---NGSSAMTYFERMSNIEQMFYEIWKDLSLNDSLTAVERSKLA 727
            .:.:|.:|.|....:    |:   :|:.|                 ||.| :|:...|..|.   
plant   699 TSRIEGMDTLIASNE----PIGVQDGTFA-----------------WKFL-VNELNIAPSRI--- 738

  Fly   728 VWDYPVSDKYTKMWQAMQEAKLPATLDEAVARVRNSTAATGFAFLGDATDIRYLQL----TNCDL 788
               .|:.|:                 :|.::.::......|.|.:.|  ::.|::.    :||..
plant   739 ---IPLKDE-----------------EEYLSALQRGPRGGGVAAIVD--ELPYIKALLSNSNCKF 781

  Fly   789 QVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWWKNDEALAKCDKPEDQSDG 853
            :.||:||:|..:..|.|:.|.|....:.|||.|..:.:|||:::||...|.   :|......::.
plant   782 RTVGQEFTRTGWGFAFQRDSPLAVDMSTAILQLAEEGKLEKIRKKWLTYDH---ECTMQISDTEN 843

  Fly   854 --ISIQNIGGVF----IVIFVGIGMACITLVFEYWWYRYRKNPRIIDVAEANAERSNAADHPGKL 912
              ||:|:..|:|    :|.|:.:.:.|    ::.:|...|..|...|..:|.:|  .|....||.
plant   844 YQISVQSFWGLFLICGVVWFIALTLFC----WKVFWQYQRLRPEESDEVQARSE--EAGSSRGKS 902

  Fly   913 VDGVILGHSGEKFEKSKAALR 933
            :..|......:..:|.:|.::
plant   903 LRAVSFKDLIKVVDKREAEIK 923

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 90/499 (18%)
PBP2_iGluR_putative 438..836 CDD:270435 91/408 (22%)
Lig_chan 565..870 CDD:278489 72/317 (23%)
GLR3.5NP_001324013.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 169 1.000 Inparanoid score I1556
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.960

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