DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir25a and GLR2.7

DIOPT Version :10

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_180476.3 Gene:GLR2.7 / 817460 AraportID:AT2G29120 Length:952 Species:Arabidopsis thaliana


Alignment Length:1038 Identity:193/1038 - (18%)
Similarity:371/1038 - (35%) Gaps:300/1038 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MILMNPKTSKILWLLGFLSLLSSFSLE---IAAQTTQNIN---VLFINEVDNEPAAKAVEVVLT- 58
            |.:|||:.:...::..|:..:..|.|.   :....|..|.   ||.::...::....::.:.|: 
plant     1 MKVMNPRKTNNTFMYYFVLFVCGFVLMEGCLGQNQTTEIKVGVVLDLHTSFSKLCLTSINISLSD 65

  Fly    59 YLKKNIRY--GLSVQL-DSIEANKSDAKVLLEAICNKYATSI----------------EKKQTPH 104
            :.|.:..|  .|::.: ||:|.....:...|:.|.|:..::|                :|.|.|.
plant    66 FYKYHSDYTTRLAIHIRDSMEDVVQASSAALDLIKNEQVSAIIGPRTSMQAEFMIRLADKSQVPT 130

  Fly   105 LILDTTKSGIAS--------ETVKSFTQALGLPTISASYGQQGDLRQWRD-----LDEAKQKYLL 156
            :....|...:.|        .|:...:|...:..|..|:|       ||:     :|....:.:|
plant   131 ITFSATCPLLTSINSPYFVRATLDDSSQVKAIAAIVKSFG-------WRNVVAIYVDNEFGEGIL 188

  Fly   157 QVMPPADIIPEAIRSIVIHMNITNAAILYDDSFVMDHKYKSLLQNIQTRHVITA----------- 210
            .::  .|.:.:....:|....|...|   :|..::...||  |..:|||..:..           
plant   189 PLL--TDALQDVQAFVVNRCLIPQEA---NDDQILKELYK--LMTMQTRVFVVHMPPTLGFRFFQ 246

  Fly   211 --------------IAKDG------KREREEQIEKLRNLDINNFFILGT---------LQSIRMV 246
                          :..||      ..||...:|.::.       :||.         |::.|:.
plant   247 KAREIGMMEEGYVWLLTDGVMNLLKSNERGSSLENMQG-------VLGVRSHIPKSKKLKNFRLR 304

  Fly   247 LESVKPAY---FERNF----AWHAITQNEGEISSQRDN-ATIMFMKPMAYTQYRDRLGLLRTT-Y 302
            .|.:.|..   .|.|.    |:.:||..  .::.::.| .::.:..|:|....:..||.|..: |
plant   305 WEKMFPKKGNDEEMNIFALRAYDSITAL--AMAVEKTNIKSLRYDHPIASGNNKTNLGTLGVSRY 367

  Fly   303 NLNEEPQLSSAFYFDLALRSFLTIKEMLQSGAWPKDMEYLNCDDFQGGNTPQRNLDLRDYFTKIT 367
            ..:....||:..:..|| ..|..|...|:|..:    :.:|.                       
plant   368 GPSLLKALSNVRFNGLA-GEFELINGQLESSVF----DVINI----------------------- 404

  Fly   368 EPTSYGTFDLVTQSTQPFNGHSFMKFEMDINVLQIRGGSSV---NSKSIGK-WISGLNSELIVKD 428
                .|:.:.:....:|.||....|.:...:||..|.|..:   .||.:.| |....|.:::   
plant   405 ----IGSEERIIGLWRPSNGIVNAKSKNTTSVLGERLGPVIWPGKSKDVPKGWQIPTNGKML--- 462

  Fly   429 EEQMKNLTADTVYRIFTVVQAPFI---------MRDETAPKGYKGYCIDLINEIAAIVHFDYTIQ 484
                         |:...|:..|:         :.:...|   .||||::...:...:.:....:
plant   463 -------------RVGIPVKKGFLEFVDAKIDPISNAMTP---TGYCIEIFEAVLKKLPYSVIPK 511

  Fly   485 EVEDGKFGNMDENGQWNGIVKKLMDKQADIGLGSMSVMAEREIVIDFTVPYYDLVGITIMMQRPS 549
            .:   .|.:.|||  ::.:|.::.....|..:|.::::|.|.:.:|||:||.: .|:::|:....
plant   512 YI---AFLSPDEN--YDEMVYQVYTGAYDAVVGDVTIVANRSLYVDFTLPYTE-SGVSMMVPLKD 570

  Fly   550 SPSSLFKFLTVLETNVWLCILAAYFFTSFLMWIFD-------RWSPYSYQNNREKYKDDEEKREF 607
            :.:: :.||.....::|:.....:.|..|::||.:       |..|:                 .
plant   571 NKNT-WVFLRPWSLDLWVTTACFFVFIGFIVWILEHRVNTDFRGPPH-----------------H 617

  Fly   608 NLKECLWFCMTSLTPQGGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPVESL 672
            .:....||..:::......:...||: |.|...|.....::|.||||||.:|.||..|...|.:.
plant   618 QIGTSFWFAFSTMNFAHREKVVSNLA-RFVVLVWCFVVLVLIQSYTANLTSFFTVKLLQPTVTNW 681

  Fly   673 DDLAKQYKILYAPLNGSSAMTYFERMSNIEQMFYEIWKDLSLNDSL-----TAVERSKLAVWDYP 732
            .||.|..|.:     |....|:..          |:.|....::|.     :|||..:|      
plant   682 KDLIKFNKNI-----GYQRGTFVR----------ELLKSQGFDESQLKPFGSAVECDEL------ 725

  Fly   733 VSDKYTKMWQAMQEAKLPATLDEAVARVR-----NSTAATGFAFLGDATDIRYLQLTNCDLQVVG 792
                       .....:.|:.|| ||.::     ||:..|                      :|.
plant   726 -----------FSNGTITASFDE-VAYIKVILSQNSSKYT----------------------MVE 756

  Fly   793 EEFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWWKNDEALAKCDKPED-------- 849
            ..|....:.....:.|.|.|..:.|||.:....:::.::.||:|         ||.:        
plant   757 PSFKTAGFGFVFPKKSPLTDDVSRAILNVTQGEEMQHIENKWFK---------KPNNCPDLNTSL 812

  Fly   850 QSDGISIQNIGGVFIVIFVGIGMACITLVFEYWWYRYRKNPRIIDVAEANAERSNAADHPGKL 912
            .|:.:|:.:..|:|::..:...:|.:..|..   :.|.....:.|.:| |:.|       |||
plant   813 SSNHLSLSSFWGLFLIAGIASFLALLIFVAN---FLYEHKHTLFDDSE-NSFR-------GKL 864

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 37..418 CDD:380606 83/469 (18%)
PBP2_iGluR_putative 438..836 CDD:270435 83/423 (20%)
GLR2.7NP_180476.3 PBP1_GABAb_receptor_plant 40..423 CDD:380645 74/437 (17%)
GluR_Plant 460..799 CDD:270404 82/437 (19%)
Lig_chan 582..832 CDD:459656 64/331 (19%)

Return to query results.
Submit another query.