DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir25a and GLR2.9

DIOPT Version :10

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_001325277.1 Gene:GLR2.9 / 817458 AraportID:AT2G29100 Length:942 Species:Arabidopsis thaliana


Alignment Length:1055 Identity:205/1055 - (19%)
Similarity:368/1055 - (34%) Gaps:326/1055 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MILMNPKTSKILWLLGFL----SLLSSFSLEIAAQTTQNINVLFINEVDNEPAAKAVEVVLTYLK 61
            |::....|....::.|||    .|..:.:.||......::|..|            .::.||.:|
plant     1 MMMKTNNTFLSYFVCGFLLMGVGLGQNQTSEIKVGVVLDLNTTF------------SKICLTSIK 53

  Fly    62 KNI------------RYGLSVQLDSIEANKSDAKVLLEAICNKYATSI----------------E 98
            ..:            |..|.|: ||:|.....:...|:.|..:..::|                .
plant    54 MAVSDFYADHPNYLTRLTLHVR-DSMEDTVQASAAALDLIKTEQVSAIIGPINSMQADFMIKLAN 117

  Fly    99 KKQTPHLILDTTKSGIAS--------ETVKSFTQALGLPTISASYGQQGDLRQWR---------D 146
            |.|.|.:....|...:.|        .|:...:|...:.:|...:       :||         :
plant   118 KTQVPTITFSATSPLLTSIKSPYFVRATIDDSSQVRAIASIFKFF-------RWRRVVAIYVDNE 175

  Fly   147 LDEAKQKYLLQVMPPAD-----IIPEAI----------------RSIVIHMNITNAAILYD---D 187
            ..|....:|...:...:     |.||||                |..|:||..:.|..::.   |
plant   176 FGEGFMPFLFDALQDVEVKRSVIPPEAIDDEIQKELRKLMERQARVFVVHMESSLALRVFQIARD 240

  Fly   188 SFVMDHKYKSLLQNIQT---RHV--------ITAI---------AKD-------GKREREEQIEK 225
            ..:|:..|..|:.|..|   ||:        |..:         :|:       .||..|::...
plant   241 IGMMEEGYVWLMTNGMTHMMRHINNGRSLNTIEGVLGVRSHVPKSKELGDFRLRWKRTFEKENPS 305

  Fly   226 LRNLDINNFFILGTLQSIRMVLESVKPAYFERNFAWHAITQNEGEISSQRDNATIMFMKPMAYTQ 290
            :|  |..|.|.|....||..:.::|:.|  .....|:             ||.:.:       ::
plant   306 MR--DDLNVFALWAYDSITALAKAVEKA--NTKSLWY-------------DNGSTL-------SK 346

  Fly   291 YRDRLGLLRTT-YNLNEEPQLSSAF---YFDLALRSFLTIKEMLQSGAWPKDMEYLNCDDFQGGN 351
            .|..||.:..: |.    |.|..||   .|:.....|..|...|||   || .|.:|   |.|..
plant   347 NRTDLGNVGVSLYG----PSLQKAFSEVRFNGLAGEFKLIDGQLQS---PK-FEIIN---FVGNE 400

  Fly   352 -------TPQRNLDLRDYFTKITEPTSYGTFDLVTQSTQPFNGHSFMKFEMDINVLQIRGGSSVN 409
                   ||:..|                                     ||        .:|.|
plant   401 ERIIGFWTPRDGL-------------------------------------MD--------ATSSN 420

  Fly   410 SKSIGKWISGLNSELIVKD-EEQMKNLTADTVYR--IFTVVQAPFIMRDETAPKGYKGYCIDLIN 471
            .|::|..|....|:::.|. |...|.|......:  .|..|:.  .:...|..|...||.|::..
plant   421 KKTLGPVIWPGKSKIVPKGWEIPGKKLRVGVPMKKGFFDFVKV--TINPITNKKTPTGYAIEIFE 483

  Fly   472 EIAAIVHFDYTIQEVEDGKFGNMDENGQWNGIVKKLMDKQADIGLGSMSVMAEREIVIDFTVPYY 536
              ||:....|.:..    ::.:.:....:|.:|.::.||..|..:|.:::.|.|.:..|||:|:.
plant   484 --AALKELPYLVIP----EYVSFESPNNYNNLVYQVYDKTWDAVVGDITITANRSLYADFTLPFT 542

  Fly   537 DLVGITIMMQ-RPSSPSSLFKFLTVLETNVWLCILAAYFFTSFLMWIFDRWSPYSYQNNREKYKD 600
            : .|:::|:. |.:.....:.||......:|:.....:.|..|::|:|:      ::.|    .|
plant   543 E-SGVSMMVPVRDNENKDTWVFLEPWSLELWVTTGCFFVFIGFVVWLFE------HRVN----TD 596

  Fly   601 DEEKREFNLKECLWFCMTSLTPQGGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRL 665
            .....::.:...|||..:::..........||: |.|...|.....::..||||:|.:||||..|
plant   597 FRGPPQYQIGTSLWFSFSTMVFAHRENVVSNLA-RFVVVVWCFVVLVLTQSYTASLTSFLTVQSL 660

  Fly   666 DTPVESLDDLAKQYKILYAPLNGSSAMTYFERMSNIEQMFYE---IWKDLSL-----NDSLTAVE 722
            ...|.:::||.|                      |.:.:.|:   ..||:.|     .|.|...:
plant   661 QPTVTNVNDLIK----------------------NRDCVGYQGGAFVKDILLGLGFHEDQLKPFD 703

  Fly   723 RSKLAVWDYPVSDKYTKMWQAMQEAKLPATLDEAVARVRNSTAATGFAFLGDATDIRYLQL---T 784
            .:|.|                          |:.:::.::...|..|      .::.||:.   .
plant   704 SAKDA--------------------------DDLLSKGKSKGIAAAF------DEVAYLKAILSQ 736

  Fly   785 NCDLQVVGE-EFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWW--KNDEALAKCDK 846
            :|...|:.| .|....:..|..:.|.|..:|:.|||.|......::::::|:  |||     |..
plant   737 SCSKYVMVEPTFKTGGFGFAFPKNSPLTGEFSRAILNLTQNNVTQQIEDRWFPKKND-----CPD 796

  Fly   847 PED--QSDGISIQNIGGVFIVIFVGIGMACITLV----FEY-----------WWYRYRKNPRIID 894
            |..  .|:.:::.:..|:|::....|..:.:..|    :|:           .|.:.:...:|.|
plant   797 PMTALSSNRLNLSSFLGLFLIAGTAISFSLLVFVALFLYEHRHTLGDDSEDSLWRKLKFLFKIFD 861

  Fly   895 VAEANAER-SNAADH 908
            ..:.|:.. .|:|.|
plant   862 EKDMNSHTFKNSAIH 876

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 37..418 CDD:380606 90/487 (18%)
PBP2_iGluR_putative 438..836 CDD:270435 83/414 (20%)
GLR2.9NP_001325277.1 PBP1_GABAb_receptor_plant 33..415 CDD:380645 84/473 (18%)
GluR_Plant 445..788 CDD:270404 84/416 (20%)
Lig_chan 568..821 CDD:459656 64/322 (20%)

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