DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir25a and grik1a

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:XP_009303592.1 Gene:grik1a / 798001 ZFINID:ZDB-GENE-030131-6502 Length:919 Species:Danio rerio


Alignment Length:968 Identity:248/968 - (25%)
Similarity:430/968 - (44%) Gaps:182/968 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KTSKILWLLGFLSLLSSFSLEIAAQTTQNINVLFINEVDNEPAAK---AVEVVLTYLKKN----- 63
            |..::|:.. |.|:...:   ::.|....|..:|... :|||.:.   |.:..:|.:.:|     
Zfish    16 KRKRLLFFF-FYSMAKFY---LSEQQVIRIGGIFETR-ENEPVSMDELAFKFAVTSINRNRTLMP 75

  Fly    64 ---IRYGLS-VQL-DSIEANKSDAKVLLEAICNKYATSIEKKQTPHLILDTTKSGIASETVKSFT 123
               :.|.:. |.| ||.||::        .:|::.|..:.....|     :..|.:::  |:|..
Zfish    76 NTTLTYDIQRVNLFDSFEASR--------RVCDQLALGVAAVFGP-----SHSSSVSA--VQSIC 125

  Fly   124 QALGLPTISASYGQQGDLRQWR--DLDEAKQKYLLQVMPPADIIPEAIRSIVIHMNITNAAILYD 186
            .||.:|.|..         :|:  .:|. |..:.:.:.|....|..||..|||........::|:
Zfish   126 NALEVPHIQT---------RWKHPSVDN-KDNFYINLYPEYTSISRAILDIVIFYKWKCVTVVYE 180

  Fly   187 DS---FVMDHKYKSLLQN---IQTRHVITA------IAKDGKRERE-------------EQIEKL 226
            ||   ..|....|:..:|   |:.|.:.:.      :.|:.|:|:|             |.:::|
Zfish   181 DSTGLMRMQELIKAPSKNNLKIRIRQLPSGGGDSRPLLKEMKKEKEFYVIFDCSYQVAAELLKQL 245

  Fly   227 RNLDINN---FFILGTLQSIRMVLESVKPAYFERNF-AWHAITQNEGEISS--QRDNATIMFMKP 285
            .::.:..   .|...||....:.||..:  |...|. |:..:..::..::|  |:.:.......|
Zfish   246 MSMGMMTEYYHFFFTTLDLFALDLEPYR--YSGVNMTAFRLLNLDDSYVASVIQKWSMERQLAPP 308

  Fly   286 MAYTQYRDRLGLLRTTYNLNEEPQLSSAFYFDLALRSFLTIKEMLQSGAWPKDMEYLNC------ 344
            ...:....  |::.|...|..:.....|.....|.:..::..:..:...|.....::|.      
Zfish   309 KPESGLMS--GIMTTAAALMYDAVFMVAVASQRATQMTVSSLQCHRHKPWRYGPRFMNLFKEAQW 371

  Fly   345 DDFQGGNTPQRNLDLRDYFTKITEPTSYGTFDLVTQSTQPFNGHSFMKFEMDINVLQIRGGSSVN 409
            |...|.....:...||..|          ..||::             .:.|....::..|:|..
Zfish   372 DGLTGRIVLNKTDGLRKEF----------NLDLIS-------------LKEDGTAKRVADGASRP 413

  Fly   410 SK---SIGKWIS--GLN-SELIVKDEEQMKNLTADTVYRIFTVVQAPFIM--RDETAPKG---YK 463
            :|   .||.|.|  ||| :|  :||.:.:.:..|:....:.|:::.|::|  :.:....|   ::
Zfish   414 NKLWTKIGVWNSYTGLNLTE--IKDNKNITDSLANRTLIVTTILENPYVMYKKSDKVLYGNDRFE 476

  Fly   464 GYCIDLINEIAAIVHFDYTIQEVEDGKFGNMDENGQWNGIVKKLMDKQADIGLGSMSVMAEREIV 528
            |||:||:.|::.|:.|.|.::.|.|||:|..::.|:|||:|::|:|..||:.:..:::...||.|
Zfish   477 GYCLDLLKELSNILGFTYEVKLVTDGKYGAQNDKGEWNGMVRELIDHIADLAVAPLTITYVREKV 541

  Fly   529 IDFTVPYYDLVGITIMMQRPSSPS-SLFKFLTVLETNVWLCILAAYFFTSFLMWIFDRWSPYSYQ 592
            |||:.|:..| ||:|:.::|:..: .:|.||..|..::|:.:|.|....|.::::..|::||.:.
Zfish   542 IDFSKPFMTL-GISILYRKPNGTNPGVFSFLNPLTPDIWMYVLLACLGVSCVLFVIARFTPYEWY 605

  Fly   593 NNREKYKDDE-EKREFNLKECLWFCMTSLTPQGGGEAPKNLSGRLVAATWWLFGFIIIASYTANL 656
            |........| .:..|.|...|||.:.:|..||....||.||.|::...||.|..|||:||||||
Zfish   606 NPHPCNPSSEVVENNFTLLNSLWFGVAALMRQGSELMPKALSTRILGGIWWFFTLIIISSYTANL 670

  Fly   657 AAFLTVSRLDTPVESLDDLAKQYKILYAPLNGSSAMTYFERMSNIEQMFYEIWKDLSLNDSLTAV 721
            ||||||.|:|:|::|.||||||.:|.|..:...|.||:|                          
Zfish   671 AAFLTVERMDSPIDSADDLAKQTRIEYGAVRDGSTMTFF-------------------------- 709

  Fly   722 ERSKLAVWDYPVSDKYTKMWQAMQEAKLPATLDEAVARVRNS------TAATGFAFLGDATDIRY 780
            ::||::.        |.|||..|...|       ..|.|:||      ...|.:|.|.::|.|.|
Zfish   710 KKSKIST--------YEKMWAFMSSRK-------NTALVKNSKDGITRVLTTDYALLMESTSIEY 759

  Fly   781 LQLTNCDLQVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWWKNDEALAKCD 845
            :...||:|..||.....|.|.:....||..:|:...|||.|..:.:|..:|||||:.:..     
Zfish   760 ITQRNCNLTQVGGLIDSKGYGVGTPIGSPYRDKVTIAILQLQEEGKLHMMKEKWWRGNGC----- 819

  Fly   846 KPEDQS---DGISIQNIGGVFIVIFVGIGMACITLVFEYWWYRYRKNPRIIDVAEANA 900
             ||:.|   ..:.::||||:|||:..|:.::....:.|: .|:..||..|.:....:|
Zfish   820 -PEEDSKEASALGVENIGGIFIVLAAGLVLSVFVAIGEF-IYKSHKNSDIEECVSFSA 875

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 85/443 (19%)
PBP2_iGluR_putative 438..836 CDD:270435 136/410 (33%)
Lig_chan 565..870 CDD:278489 104/314 (33%)
grik1aXP_009303592.1 Periplasmic_Binding_Protein_Type_1 37..432 CDD:299141 85/447 (19%)
ANF_receptor 57..398 CDD:279440 69/392 (18%)
Periplasmic_Binding_Protein_Type_2 446..815 CDD:304360 136/410 (33%)
Lig_chan 577..846 CDD:278489 104/315 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591614
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

Return to query results.
Submit another query.