DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir25a and grid1a

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:XP_021323097.1 Gene:grid1a / 793756 ZFINID:ZDB-GENE-120411-28 Length:1044 Species:Danio rerio


Alignment Length:984 Identity:237/984 - (24%)
Similarity:402/984 - (40%) Gaps:235/984 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LWLLGFLSLLSSFSLEIAAQTTQNINVLFINEVDNEPAAKAVEVVLTYLKKNIRYGLSVQLDSIE 76
            ||:|...|..:...:.|.|...||.    |.  |:|....|:.            .||:..|.::
Zfish    10 LWILQCRSARADSIIHIGAIFEQNA----IR--DDEVFQLAIS------------DLSLNDDILQ 56

  Fly    77 ANKSDAKVLLEAICNKYAT---SIEKKQTPHLILDTTKSGIASETVKSFTQALGLPTISASYGQQ 138
            :.:....:.|....|.:..   :.|......|.|.::....|:..::|.|.|:.:|.:.......
Zfish    57 SERITHSIKLIEPNNPFQAVQEACELMNQGILALVSSTGCAAANALQSLTDAMHIPHLFIQRNGD 121

  Fly   139 GDLRQWRDLDEAK--QKYLLQVMPPA---DIIPEAIRSIVIHMNITNAAILYDDSF-------VM 191
            |..|....|:.:.  ::|.|...||.   |::...:..:..|..|    :.||..:       .:
Zfish   122 GTPRAECQLNPSPDGERYTLAARPPVRLNDVMITLVSELRWHKFI----VFYDSEYDVRGLRGFL 182

  Fly   192 DHKYKS----LLQNIQTRHVITAIAKDGKREREEQIEKLRNLDINNFFILGTLQSIRMVLESVKP 252
            |...:.    .||.:. |:|....:......|.|::.:.|:          ||:...::|.....
Zfish   183 DQASRMGLDVSLQQVD-RNVTKVFSTLFSTMRMEELNRYRD----------TLRRAILLLSPRTA 236

  Fly   253 AYF-----ERNFA---WHAITQNEGEISSQRDNATIMFMKPMA----------YTQYRD-RLGLL 298
            ..|     |.|.|   .|.:..|| |:|    :..||.:...|          :..:|| .:..:
Zfish   237 QVFIHQAVETNLASKDSHWVYANE-EVS----DTEIMELVHSALGRMTVIRQIFPLWRDTNIRCM 296

  Fly   299 RTTYNLNE---EPQ--------LSSAFYFDLALRSFLTIKEMLQSGAWPKDMEYLNCDDFQGGNT 352
            |..:.::.   :||        :||.:.:|..|.........|:...| ..|..|||        
Zfish   297 RNNHRISSLLCDPQEGYLQSLEVSSLYLYDSVLMLANAFYRKLEDRKW-HSMASLNC-------- 352

  Fly   353 PQRNLDLRDYFTKITEPTSYGTFDLVTQSTQPFNG---------------------------HSF 390
                                     :.:||:|:||                           :|.
Zfish   353 -------------------------MRKSTKPWNGGWSMLDTIQKGRISGLTGLMDFRSNGANSH 392

  Fly   391 MKFEMDINVLQIRGGSSVNSKSIGK-------WIS--GLNSELIV-KDEEQMKNLTADTVYRIFT 445
            ::||       |.|.|  .|::.||       |.|  |||..|.. :.:..|:.:|    .::.|
Zfish   393 VQFE-------ILGTS--YSETFGKDVKRLATWDSDRGLNGSLRENRADHGMQGIT----LKVVT 444

  Fly   446 VVQAPFIMRDET---APKGYKGYCIDLINEIAAIVHFDYTIQEVEDGKFGNMDENGQWNGIVKKL 507
            :::.||:|..|.   .||.|||:.||:::.:|.|:.|.|.:.:|.|.|:|:...||.|||::.:|
Zfish   445 LLEEPFVMVAENILGQPKRYKGFSIDVLDALAKILGFKYEMYQVADAKYGSPQTNGSWNGMIGEL 509

  Fly   508 MDKQADIGLGSMSVMAEREIVIDFTVPYYDLVGITIMMQRPSSPSSLFKFLTVLETNVWLCILAA 572
            :.|:||:.:.::::..|||.|:||:..|.| ..:.|:|.:.....::|..|...:..||.||.||
Zfish   510 IGKRADVAISAITITPERENVVDFSKRYLD-YSVGILMTKTEERLNIFSLLAPFDLAVWACIAAA 573

  Fly   573 YFFTSFLMWIFDRWSPYSYQNNREKYKDDEEKREFNLKECLWFCMTSLTPQGGGEAPKNLSGRLV 637
            ......::::..|......||....::.......|  :..:|....:...|||.....:::.|:.
Zfish   574 IPVVGVMVFLLRRVQSVRSQNPPGPHQPASVTTSF--QSAIWIVYGAFVQQGGESFMSSMALRIA 636

  Fly   638 AATWWLFGFIIIASYTANLAAFLTVSRLDTPVESLDDLAKQYKILYAPLNGSSAMTYF--ERMSN 700
            ..:||||..|:.:||||||||:|||||:|..:.:..||:||.:|.|..:..|:...||  :..:.
Zfish   637 MGSWWLFTLIVCSSYTANLAAYLTVSRMDNAIRTFQDLSKQSEINYGTVRESAVFEYFRVKGTNP 701

  Fly   701 IEQ--MFYEIWKDLSLN----DSLTAVERSKLAVWDYPVSDKYTKMWQAMQEAKLPATLDEAVAR 759
            :||  .|.|:|:.::.|    :|:|:                             ||   |.:.:
Zfish   702 LEQDSTFAELWRTINKNQGQDNSVTS-----------------------------PA---EGIRK 734

  Fly   760 VRNSTAATGFAFLGDATDIRYLQLT--NCDLQVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLL 822
            |:...    :|||.|...:.|..||  :|.|.|.|...|.|.|.:|:|.||..:|.|:..||.|.
Zfish   735 VKRDP----YAFLWDMAVLEYAALTDDDCTLVVTGNGMSSKGYGLALQHGSPYRDLFSQKILDLQ 795

  Fly   823 NKRQLEKLKEKWWKNDEALAKCD-----KPEDQSDGISIQNIGGVFIVIFVGIGMACITLVFEYW 882
            .|..|:.||:|||...   .:||     :|:.:...:.:.:..|||.::..|:.:||:....|.|
Zfish   796 EKGDLDILKQKWWPRK---GRCDLDKHAEPQTEGRALRLHSFAGVFCILAAGLLLACLVAALESW 857

  Fly   883 WYRYRKNPR 891
            |    ..||
Zfish   858 W----NGPR 862

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 87/470 (19%)
PBP2_iGluR_putative 438..836 CDD:270435 125/410 (30%)
Lig_chan 565..870 CDD:278489 91/319 (29%)
grid1aXP_021323097.1 Periplasmic_Binding_Protein_Type_1 25..424 CDD:324556 89/479 (19%)
PBP2_iGluR_delta_1 437..809 CDD:270448 126/414 (30%)
DNA_pol3_gamma3 <915..1044 CDD:331207
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591155
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

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