DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir25a and Grid1

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_077354.1 Gene:Grid1 / 79219 RGDID:68366 Length:1009 Species:Rattus norvegicus


Alignment Length:970 Identity:239/970 - (24%)
Similarity:415/970 - (42%) Gaps:179/970 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LWLLGFLSLLSSFSLEIAAQTTQNINVLFINEVDNEPAAK---AVEVVLTYLKKN--------IR 65
            ||||.::         ....|.:..:::.|..:..|.|||   ..::.::.|..|        |.
  Rat     6 LWLLPWI---------CQCVTVRADSIIHIGAIFEENAAKDDRVFQLAVSDLSLNDDILQSEKIT 61

  Fly    66 YGLSVQLDSIEANKSDAKVLLEAICNKYATSIEKKQTPHLILDTTKSGIAS-ETVKSFTQALGLP 129
            |.:.|    ||||.....|  :..|:        ..|..::...|.:|.|| ..::|.|.|:.:|
  Rat    62 YSIKV----IEANNPFQAV--QEACD--------LMTQGILALVTSTGCASANALQSLTDAMHIP 112

  Fly   130 TISASYGQQGDLRQWRDLDEAK--QKYLLQVMPPADIIPEAIRSIVIHMNITNAAILYD------ 186
            .:.......|..|....|:.:.  :.|.|...||..:....:| :|..:......:.||      
  Rat   113 HLFVQRNPGGSPRTACHLNPSPDGEAYTLASRPPVRLNDVMLR-LVTELRWQKFVMFYDSEYDIR 176

  Fly   187 --DSFV-------MDHKYKSLLQNIQTRHVITAIAKDGKREREEQIEKLRNLDINNFFILGTLQS 242
              .||:       :|...:.:.:||.  ||.|::....|   .|::.:.|:.......:|....:
  Rat   177 GLQSFLDQASRLGLDVSLQKVDKNIS--HVFTSLFTTMK---TEELNRYRDTLRRAILLLSPQGA 236

  Fly   243 IRMVLESVKPAYFERNFAWHAITQNEGE------ISSQRDNATIMFMKPMAYTQYRDRLGLLRTT 301
            ...:.|:|:.....::..|..:.:...:      :.|.....|::   ...:...:|....:|..
  Rat   237 HSFINEAVETNLASKDSHWVFVNEEISDPEILDLVHSALGRMTVV---RQIFPSAKDNQKCMRNN 298

  Fly   302 YNLNE---EP--------QLSSAFYFDLALRSFLTIKEMLQSGAWPKDMEYLNC-----DDFQGG 350
            :.::.   :|        |:|:.:.:|..|.........|:...| ..|..|||     ..:.||
  Rat   299 HRISSLLCDPQEGYLQMLQISNLYLYDSVLMLANAFHRKLEDRKW-HSMASLNCIRKSTKPWNGG 362

  Fly   351 NTPQRNLDL--RDYFTKITEPTSYGTFDLVTQSTQPFNGHSFMKFEMDINVLQIRGGSSVNSKSI 413
            .:   .||.  :.:.|.:|     |..:....|:.|     :::||       |.|  :..|::.
  Rat   363 RS---MLDTIKKGHITGLT-----GVMEFREDSSNP-----YVQFE-------ILG--TTYSETF 405

  Fly   414 GK-------WIS--GLNSELIVKDEEQMKNLTADTVYRIFTVVQAPFIMRDET---APKGYKGYC 466
            ||       |.|  |||..|   .|..|.:.......::.||::.||:|..|.   .||.|||:.
  Rat   406 GKDMRKLATWDSEKGLNGSL---QERPMGSRLQGLTLKVVTVLEEPFVMVAENILGQPKRYKGFS 467

  Fly   467 IDLINEIAAIVHFDYTIQEVEDGKFGNMDENGQWNGIVKKLMDKQADIGLGSMSVMAEREIVIDF 531
            ||:::.:|..:.|.|.|.:..||::|:...|..|||::.:|:.|:||:.:.::::..|||.|:||
  Rat   468 IDVLDALAKALGFKYEIYQAPDGRYGHQLHNTSWNGMIGELISKRADLAISAITITPERESVVDF 532

  Fly   532 TVPYYDLVGITIMMQRPSSPSSLFKFLTVLETNVWLCILAAYFFTSFLMWIFDRWSPYSYQNNRE 596
            :..|.| ..:.|::::|....|:|......:..||.||.||......|:::.:|......|:..:
  Rat   533 SKRYMD-YSVGILIKKPEEKISIFSLFAPFDFAVWACIAAAIPVVGVLIFVLNRIQAVRSQSATQ 596

  Fly   597 KYKDDEEKREFNLKECLWFCMTSLTPQGGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLT 661
                ........|...:|....:...|||..:..:::.|:|..:||||..|:.:|||||||||||
  Rat   597 ----PRPSASATLHSAIWIVYGAFVQQGGESSVNSVAMRIVMGSWWLFTLIVCSSYTANLAAFLT 657

  Fly   662 VSRLDTPVESLDDLAKQYKILYAPLNGSSAMTYFERMSN--IEQ--MFYEIWKDLSLNDSLTAVE 722
            |||:|:||.:..||:||.::.|..:..|:...||.....  :||  .|.|:|:.:|.|...    
  Rat   658 VSRMDSPVRTFQDLSKQLEMSYGTVRDSAVYEYFRAKGTNPLEQDSTFAELWRTISKNGGA---- 718

  Fly   723 RSKLAVWDYPVSDKYTKMWQAMQEAKLPATLDEAVARVRNSTAATGFAFLGDATDIRYLQLT--N 785
                   |..||:.                 .|.:.:.:..    .:|||.|...:.|..||  :
  Rat   719 -------DNCVSNP-----------------SEGIRKAKKG----NYAFLWDVAVVEYAALTDDD 755

  Fly   786 CDLQVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWWKNDEALAKCD---KP 847
            |.:.|:|...|.|.|.||:|.||..:|.|:..||.|.:...|:.||:|||.:   ..:||   ..
  Rat   756 CSVTVIGNSISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWPH---TGRCDLTSHS 817

  Fly   848 EDQSDG--ISIQNIGGVFIVIFVGIGMACITLVFEYWWYR---YRKNPRIIDVAEANAER 902
            ..|:||  :.:.:..|||.::.:|:.:||:....|.||..   :::.|:  :..|.|.|:
  Rat   818 SAQTDGKSLKLHSFAGVFCILAIGLLLACLVAALELWWNSNRCHQETPK--EDKEVNLEQ 875

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 88/447 (20%)
PBP2_iGluR_putative 438..836 CDD:270435 125/406 (31%)
Lig_chan 565..870 CDD:278489 94/315 (30%)
Grid1NP_077354.1 Interaction with CBLN1. /evidence=ECO:0000250|UniProtKB:Q61627 21..436 90/463 (19%)
PBP1_iGluR_delta_1 25..423 CDD:107387 86/443 (19%)
ANF_receptor 41..400 CDD:279440 74/404 (18%)
PBP2_iGluR_delta_1 436..806 CDD:270448 125/406 (31%)
Lig_chan 564..841 CDD:278489 94/315 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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