DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir25a and grik5-like.1

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_001072565.1 Gene:grik5-like.1 / 780020 XenbaseID:XB-GENE-5860197 Length:479 Species:Xenopus tropicalis


Alignment Length:541 Identity:147/541 - (27%)
Similarity:252/541 - (46%) Gaps:100/541 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   407 SVNSKSIGKWISGLNSELIVKDEEQ-----MKNLTADTVYRIFTVVQAPFIMRDETAPKGYKGYC 466
            :|...|:|...:|.:...|.|::|:     :|:||      :.|:::.||.|:.|:   |.:|:|
 Frog    10 AVTLLSVGCTDAGESKGSIHKEKERSKRQALKHLT------VTTIMEQPFSMKTES---GMEGFC 65

  Fly   467 IDLINEIAAIVHFDYTIQEVEDGKFGNMDENGQWNGIVKKLMDKQADIGLGSMSVMAEREIVIDF 531
            |||::|:|..:.|:|||:||:||::|..|::|.|||:|.:::.|:||:.:..:::...||..:.|
 Frog    66 IDLLSELAQSLGFNYTIKEVKDGRYGAKDQDGNWNGMVGEVLRKEADLAVAPLTITGARERELAF 130

  Fly   532 TVPYYDLVGITIMMQRP--SSPSSLFKFLTVLETNVWLCILAAYFFTSFLMWIFDRWSPYSY--- 591
            |.|:.. .||:|::::.  |..|.||.|||......|:.||.||..||..:::..|.||..:   
 Frog   131 TKPFMQ-TGISILLRKDDVSENSYLFGFLTPFSKETWIGILVAYVVTSLCLFLVGRLSPCEWTEL 194

  Fly   592 ---QNNREKYKDDEEKREFNLKECLWFCMTSLTPQGGGEAPKNLSGRLVAATWWLFGFIIIASYT 653
               |||            ||....|||.:.:.|.||....||::|.|::|..||:|..:::|:|.
 Frog   195 STEQNN------------FNFLNSLWFGVGAFTLQGAEPHPKSVSARIIAVIWWIFSIVLVAAYI 247

  Fly   654 ANLAAFLTVSRLDTP-VESLDDLAKQYKILYAPLNGSSAMTYFERMSNIEQMFYEIWKDLSLNDS 717
            |:.||||....:.|. :::.:||..|..:.:..:|.||...:|:...|                 
 Frog   248 ASFAAFLNSDSMQTTNIQTFEDLVNQRTLEFGTINSSSTFQFFKNSKN----------------- 295

  Fly   718 LTAVERSKLAVWDYPVSDKYTKMWQAMQEAK---LPATLDEAVARVRNSTAATGFAFLGDATDIR 779
                             ..|..:::.|.:.|   |..:..|.|.||:.|    .:||||::....
 Frog   296 -----------------PTYRMIYEYMDKRKDELLVKSFAEGVRRVKES----NYAFLGESVMQD 339

  Fly   780 YLQLTNCDLQVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWWKNDEALAKC 844
            .:...:|||....:..:.:.|.||....|.|....:.|||.......:|.|::|||.|     .|
 Frog   340 IMVAKHCDLVRAPQIIAGRGYGIAASLDSPLIKPLSVAILEQTESGNIEYLRKKWWDN-----TC 399

  Fly   845 DKPEDQS-DGISIQNIGGVFIVIFVGIGMACITLVFEYWWYRYRKNPRIIDVAEANAERSNAADH 908
            :...... :.:....:||:|:::.:|:.:..|..:.|.             |.:|.    |.||.
 Frog   400 NMKRSAGWNPVQPHTLGGIFLILGIGLALGVIAALVEL-------------VLKAR----NNADQ 447

  Fly   909 PGKLVDGVILGHSGEKFEKSK 929
            ..|..........||:...:|
 Frog   448 QKKSCCSAFSEEMGERLGTNK 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 4/18 (22%)
PBP2_iGluR_putative 438..836 CDD:270435 119/409 (29%)
Lig_chan 565..870 CDD:278489 79/315 (25%)
grik5-like.1NP_001072565.1 PBP2_iGluR_non_NMDA_like 41..396 CDD:270403 122/414 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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