DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir25a and grin1a

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:XP_005161118.1 Gene:grin1a / 767745 ZFINID:ZDB-GENE-051202-1 Length:951 Species:Danio rerio


Alignment Length:1043 Identity:215/1043 - (20%)
Similarity:386/1043 - (37%) Gaps:297/1043 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 NEVDNEPAAKAVEVVLTYLKKNIRYGLSVQLDSIEANKSDAKVLLEAICNKYATSIEKKQTPHLI 106
            |:|......|...:.:|:....|:..|||..|.|.:.       :.||...:........||   
Zfish    47 NQVYGRDKFKLTAISVTHKANAIQMALSVCEDLISSQ-------VYAILVSHPPQSNDHLTP--- 101

  Fly   107 LDTTKSGIASETVKSFT------QALGLPTISASYGQQGDLRQWRDLDEAKQKYLLQVMPPADII 165
                       |..|:|      ..:||.|..:.|.           |::.....|:.:||    
Zfish   102 -----------TPVSYTAGFYRIPVVGLTTRMSIYS-----------DKSIHLSFLRTVPP---- 140

  Fly   166 PEAIRSIVIHMNITNAAILYDDSFVMDHKYKSLLQNIQTRHVITAIAKDGK-REREEQIEKLRNL 229
                               |..   ..|.:..:::..:..|:|..::.|.: |..::::|.|   
Zfish   141 -------------------YSH---QAHVWFDMMREFRWNHIILIVSDDHEGRAAQKRLETL--- 180

  Fly   230 DINNFFILGTLQSIRMVLESVKPAYFERNFAWHAITQNEGEIS---------------SQRDNAT 279
                             ||..:....:||:      :|:.::|               :|..|.|
Zfish   181 -----------------LEERETKNKKRNY------ENQDQLSYDNKRGPKAEKVLQFNQETNLT 222

  Fly   280 IMFMKP--------MAYTQYRDRLGLLRTTYNLNEEPQLSSAFYFDLALRSFLTIKEMLQSGAWP 336
            .:.::.        :......|...:.:|...||    ::.:.|..|.....::.|.:.::....
Zfish   223 ALLLEAKELEARVIILSASEEDAAAVYKTARFLN----MTGSGYVWLVGEREMSGKALSEAPDGL 283

  Fly   337 KDMEYLNCDDFQGGNTPQRNLD--------LRDYFTK--ITEP---------------------- 369
            ..::.:|     |.|......|        :::.|.|  ||||                      
Zfish   284 IGLQLIN-----GKNESAHISDAVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLM 343

  Fly   370 -TSY-----GTFDLVTQSTQPFNGHSFMKFEMDINVLQ--IRGGSSV--NSKSIGKWISGLNSEL 424
             :.|     |..:......:.:..:|.:.::.. .::|  |..|:.|  |.:....|..|     
Zfish   344 SSKYPEGLTGRVEFNDDGDRKYAHYSILNYQKS-RLIQVGIYNGTQVVMNKQRKIIWPGG----- 402

  Fly   425 IVKDEEQMKNLTADTVYRIFTVVQAPFI----------MRDETAPKGY----------------- 462
               :.|:.:.....|..:|.|:.|.||:          .::|..|.|.                 
Zfish   403 ---ETERPRGFQMSTRLKIVTIHQEPFVYVKPTTLEGTCKEEYTPNGVLIKKVICTGPNETIPGN 464

  Fly   463 -----------KGYCIDLINEIAAIVHFDYTIQEVEDGKFG-----NMDENGQWNGIVKKLMDKQ 511
                       .|:||||:.::|..::|.|.:..|.|||||     |.....:|||::.:|:...
Zfish   465 TSGRPIVPQCCYGFCIDLLIKLALTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGL 529

  Fly   512 ADIGLGSMSVMAEREIVIDFTVPY-YDLVGITIMMQRPSSPSSLFKFLTVLETNVWLCILAAYFF 575
            ||:.:..:::..||...|:|:.|: |.  |:||::::....|:|..|:...::.:||.:..:...
Zfish   530 ADMIVAPLTINNERAQYIEFSKPFKYQ--GLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHV 592

  Fly   576 TSFLMWIFDRWSPYS-YQNNREKYKDDEEKREFNLKECLWFCMTSLTPQGGGE-APKNLSGRLVA 638
            .:.::::.||:||:. ::.|.|    :||:....|...:||....|...|.|| ||::.|.|::.
Zfish   593 VAVMLYLLDRFSPFGRFKVNSE----EEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILG 653

  Fly   639 ATWWLFGFIIIASYTANLAAFLTVSRLDTPVESLDDLAKQY---KILYAPLNGSSAMTYFERMSN 700
            ..|..|..||:|||||||||||.:.|.:..:..::|...:.   |.:||.:..||...||.|...
Zfish   654 MVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVE 718

  Fly   701 IEQMFYEIWKDLSLNDSLTAVERSKLAVWDYPVSDKYTKMWQAMQEAKLPATLDEAVARVRNSTA 765
            :..|:..:.|. :...:..|:                    ||:::.||                
Zfish   719 LSTMYRHMEKH-NYESAAEAI--------------------QAVRDNKL---------------- 746

  Fly   766 ATGFAFLGDATDIRYLQLTNCDLQVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKL 830
               .||:.|:..:.:.....|||...||.|.|..:.|.:::.|..|...:.|||:......:|.|
Zfish   747 ---HAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLAILSSHENGFMEDL 808

  Fly   831 KEKWWKNDEALAKCDKPEDQSDGISIQNIGGVFIVIFVGIGMACITLVFEYWWYRYRKNPR---- 891
            .:.|.:..|    ||...:....::.:|:.|||:::..||. |.|.|:|....|:..|:.|    
Zfish   809 DKTWVRYQE----CDSRSNAPATLTFENMAGVFMLVAGGIA-AGIFLIFIEIAYKRHKDARRKQM 868

  Fly   892 IIDVAEANAERSNAADHPGKLVDGVILGHSG--EKFEKSKAALR---------------PRFNQY 939
            .:..|..|..|.|.  .|...|:......||  :...|.|.:.|               .:..||
Zfish   869 QLAFAAVNVWRKNL--QPSSSVETQDDRKSGRADSDPKKKPSFRSISTTLASSIKRRRSSKDTQY 931

  Fly   940 PAT 942
            |.|
Zfish   932 PPT 934

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 69/455 (15%)
PBP2_iGluR_putative 438..836 CDD:270435 114/446 (26%)
Lig_chan 565..870 CDD:278489 79/309 (26%)
grin1aXP_005161118.1 PBP1_iGluR_NMDA_NR1 5..401 CDD:107374 68/447 (15%)
ANF_receptor 54..372 CDD:279440 60/410 (15%)
PBP2_iGluR_NMDA_Nr1 413..819 CDD:270437 115/455 (25%)
Lig_chan 581..844 CDD:278489 79/310 (25%)
CaM_bdg_C0 855..883 CDD:287524 7/29 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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