DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir25a and grid1b

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:XP_009304811.1 Gene:grid1b / 557511 ZFINID:ZDB-GENE-121214-84 Length:1048 Species:Danio rerio


Alignment Length:1025 Identity:242/1025 - (23%)
Similarity:415/1025 - (40%) Gaps:217/1025 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 NVLFINEVDNEPAAKAVEVVLTYLKKNIRYGLSVQLDSIEANKSDAKVLLEAICNKYATSIE--K 99
            :::.|..:..|.||:..||....:.     .||:..|.:::.|....:......|.:....|  :
Zfish    22 SIIHIGAIFEENAARDDEVFQLAIS-----DLSLNDDILQSEKITHSIKYIEPNNPFQAVQEACE 81

  Fly   100 KQTPHLILDTTKSGIAS-ETVKSFTQALGLPTISASYGQQGDLRQWRDLDEAK--QKYLLQVMPP 161
            ..|..::...|.:|.|| ..::|.|.|:.:|.:......:|..|....|:.:.  ::|.|...||
Zfish    82 LMTQGILALVTSTGCASASALQSLTDAMHIPHLYVQRNAEGSPRTACQLNPSPDGERYTLAARPP 146

  Fly   162 ADIIPEAIRSIVIHMNITNAAILYDDSFVMDHKYKSL---------------LQNIQTRHVITAI 211
            .. :.:.:.::|..:......:.||.    |:..:.|               ||.:. |::....
Zfish   147 VR-LGDVMLTLVGELRWQKFIVFYDS----DYDIRGLQVFLDQTSRQGLDVSLQRVD-RNISGVF 205

  Fly   212 AKDGKREREEQIEKLRNLDINNFFILGTLQSIRMVLESVKPAYF-----ERNFA---WHAITQNE 268
            :......|.|::.:.|:          ||:...::|.......|     |.|.|   .|.:..||
Zfish   206 SSLFTSMRTEELNRYRD----------TLRRAILLLSPRGAQVFIHQAVETNLASKDSHWVFVNE 260

  Fly   269 GEIS---------SQRDNATIMFMKPMAYTQYRD-RLGLLRTTYNLNE---EPQ--------LSS 312
             |||         |.....|::   ...:..:|| .:..:|.::.::.   :||        :|:
Zfish   261 -EISDTEILELAHSSLGRMTVV---RQIFPLWRDSSVSCMRNSHRISSLLCDPQEGYLQSLEVSN 321

  Fly   313 AFYFDLALRSFLTIKEMLQSGAWPKDMEYLNCDDFQGGNTPQRNLDLRDYFTKITEPTSYGTFDL 377
            .:.:|..|.........|:...| ..|..|||                                 
Zfish   322 LYLYDSVLMLANAFYRKLEDRKW-HSMASLNC--------------------------------- 352

  Fly   378 VTQSTQPFNG-------------------HSFMKFEMDINV-LQIRGGSSVNSKSIGK------- 415
            :.:||:|:||                   ..||:...:.:| .:|.|.|.  |::.||       
Zfish   353 IRKSTKPWNGGWSMLETIQKGRITGLTGIMDFMENGSNSHVQFEILGTSF--SETFGKDIKRLAT 415

  Fly   416 W--ISGLNSELIVKDEEQMKNLTADTVYRIFTVVQAPFIMRDET---APKGYKGYCIDLINEIAA 475
            |  :.|||..|   .|.:::|.......::.|:::.||:|..|.   .||.|||:.||::..:|.
Zfish   416 WDSVHGLNGSL---KESRIENGMQGVTVKVVTLLEDPFVMVAENILGQPKRYKGFSIDVLEALAK 477

  Fly   476 IVHFDYTIQEVEDGKFGNMDENGQWNGIVKKLMDKQADIGLGSMSVMAEREIVIDFTVPYYDLVG 540
            |:.|.|.|.:|.|.|:|:...||.|||::.:|::|:||:.:.::::..|||.|:||:..|.| ..
Zfish   478 ILGFKYDIYQVADSKYGSQLSNGSWNGMIGELINKRADLAVSAITITPERENVVDFSKRYMD-YS 541

  Fly   541 ITIMMQRPSSPSSLFKFLTVLETNVWLCILAAYFFTSFLMWIFDRWSPYSYQNNREKYKDDEEKR 605
            :.|:.::|....::|......:..||.||.||......|:::..|......||....:.......
Zfish   542 VGILHRKPEEKINIFSLFAPFDLAVWACIAAAIPVVGVLIFLLTRMQMLRSQNPPGAHHASSMSN 606

  Fly   606 EFNLKECLWFCMTSLTPQGGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPVE 670
              :|...:|....:...|||.....:::.|:|..:||||..|:.:||||||||||||||:|..:.
Zfish   607 --SLHSAIWIVYGAFVQQGGDSVVGSVALRIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNTIR 669

  Fly   671 SLDDLAKQYKILYAPLNGSSAMTYFERMSN--IEQ--MFYEIWKDLSLNDSLTAVERSKLAVWDY 731
            :..|||:|....|..:..|:...||:....  :||  .:.|:|:.:|.|:.           .|:
Zfish   670 TFQDLARQMDFAYGTVRDSAVYDYFKAKGTNPLEQDSTYAELWRTISKNNG-----------QDF 723

  Fly   732 PVSDKYTKMWQAMQEAKLPATLDEAVARVRNSTAATGFAFLGDATDIRYLQLT--NCDLQVVGEE 794
            .||..                 .|.:.:.:...    :|||.|...:.|..||  :|.:.|.|..
Zfish   724 SVSSP-----------------SEGIRKAKKGP----YAFLWDMAVVEYAALTDDDCTITVSGNS 767

  Fly   795 FSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWWKNDEALAKCD---KPEDQSDG--I 854
            .|.|.|.||:|.||..:|..:..||.|..|..|:.||:|||..   ..:||   ....|.||  :
Zfish   768 MSSKGYGIAMQHGSPYRDLISQKILELQEKGDLDVLKQKWWPR---TGRCDLNSHSNAQPDGRSL 829

  Fly   855 SIQNIGGVFIVIFVGIGMACITLVFEYWWYRYR---KNPRII----------------DVAEANA 900
            .:.:..|||.::..|:.:||:....|.||...|   :.|:.:                |:|.|::
Zfish   830 KLHSFAGVFCILAAGLLLACLVAALEMWWNSNRCRQEQPKEVTKDYRLARVSGPLTYNDIATASS 894

  Fly   901 ERS----NAADHPGKLVDGVILGHSGEKFEKSKAALRPRFNQYPATFKPR 946
            |.|    ...:......:.:..|..||....:.|..:|....:.....||
Zfish   895 EGSKDIWTDRERDWDEAEAIDTGQGGEPGTGASAFEQPYGRGHGTQADPR 944

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 87/463 (19%)
PBP2_iGluR_putative 438..836 CDD:270435 124/406 (31%)
Lig_chan 565..870 CDD:278489 92/315 (29%)
grid1bXP_009304811.1 PBP1_iGluR_delta_1 25..424 CDD:107387 85/459 (19%)
ANF_receptor 36..400 CDD:279440 73/422 (17%)
Periplasmic_Binding_Protein_Type_2 437..809 CDD:304360 124/406 (31%)
Lig_chan 565..840 CDD:278489 92/311 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591154
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

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