DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir25a and gria4a

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_999971.1 Gene:gria4a / 407735 ZFINID:ZDB-GENE-020125-7 Length:898 Species:Danio rerio


Alignment Length:1030 Identity:274/1030 - (26%)
Similarity:444/1030 - (43%) Gaps:259/1030 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 ILWLLGFLSLLSSFSLEIAAQTTQNINVLFINEVDNEPAAKAVEVVLTYLKKNIR---YGLSVQL 72
            :||.||          |.|..::..|..|||...|.|..|..:.:.|.....|..   :.|...:
Zfish     9 LLWGLG----------EGAFPSSVQIGGLFIRNTDQEYTAFRLAIFLHNTSPNATEAPFNLVPHV 63

  Fly    73 DSIEANKSDAKVLLEAICNKYATSI------EKKQTPHLILDTTKSGIASETVKSFTQALGLPTI 131
            |:||...|.|  :..|.|::|:..:      ..|::.|             |:.||..||.:..:
Zfish    64 DNIETANSFA--VTNAFCSQYSRGVFAIFGLYDKRSVH-------------TLTSFCSALHISLV 113

  Fly   132 SASYGQQGDLRQWRDLDEAKQKYLLQVMPPADIIPEAIRSIVIHMNITNAAILYD---------- 186
            :.|:..:|:           .:::||:.|.   |..|:.|::.|.:.:....|||          
Zfish   114 TPSFPAEGE-----------TQFVLQLRPS---IRGALLSLLDHYDWSRFVFLYDTDRGYAVLQA 164

  Fly   187 -----------------DSFVMDHKYKSLLQNIQTRHVITAIAKDGKREREEQIEKLRNLDINNF 234
                             ::| .|..|:.||:::..|       ::.|...:.:.|:|:|:     
Zfish   165 IMEKAGQNGWQVSAICVENF-NDASYRRLLEDLDRR-------QEKKFVIDLEAERLQNI----- 216

  Fly   235 FILGTLQSIRMVLESVKPAYFERNFAWHAITQNEG--EISSQR-----DNAT----IMFMKPMAY 288
                 |:.|..|.:.||        .:|.|..|.|  :||.:|     .|.|    :.|.|||. 
Zfish   217 -----LEQIVSVGKHVK--------GYHYIVANLGFKDISLERFMHGGANVTGFQLVDFSKPMV- 267

  Fly   289 TQYRDRLGLLRTTYNLNEE--------PQLSSAFYFDLALRSFLTIKEMLQSGAWPKDMEYLNCD 345
                  :.|::....|::.        |:.:|:..:|    ..|.:.|..:              
Zfish   268 ------IKLMQRWNKLDQREYPGSESPPRYTSSLTYD----GVLVMAEAFR-------------- 308

  Fly   346 DFQGGNTPQRNLDLRDYFTKITEPTSYGTFDLVTQSTQPFNGHSFMKFEMDINVLQIRG------ 404
                 |..::.:|       |:...:.|  |.:.....|:|  ..:..|..:..::|:|      
Zfish   309 -----NLRRQKID-------ISRRGNAG--DCLANPAAPWN--QGIDMERTLKQVRIQGLTGNIQ 357

  Fly   405 ----GSSVN------------SKSIGKWISGLNSELIVKDEEQMKNLTA--DTVYRIFTVVQAPF 451
                |..||            .:.||.| :.|:..::|::|..|.|.:|  :....:.|:::.|:
Zfish   358 FDHYGRRVNYTMDVFELKSNGPRKIGYW-NDLDKLVLVQNELSMGNDSAMENRTVIVTTIMEGPY 421

  Fly   452 IMRDET-----APKGYKGYCIDLINEIAAIVHFDYTIQEVEDGKFGNMD-ENGQWNGIVKKLMDK 510
            :|..:.     ..:.::|||:||.:|:|..:...|.|..|.|||:|..| |...|||:|.:|:..
Zfish   422 VMLKKNWEMYEGNEQFEGYCVDLASEVAKHIGIKYKISIVLDGKYGARDPETKIWNGMVGELVYG 486

  Fly   511 QADIGLGSMSVMAEREIVIDFTVPYYDLVGITIMMQRP-SSPSSLFKFLTVLETNVWLCILAAYF 574
            :|:|.:..:::...||.||||:.|:..| ||:||:::| .|...:|.||..|...:|:||:.||.
Zfish   487 KAEIAVAPLAITLVREEVIDFSKPFMSL-GISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYI 550

  Fly   575 FTSFLMWIFDRWSPYSYQNNR-EKYKD----DEEKREFNLKECLWFCMTSLTPQGGGEAPKNLSG 634
            ..|.::::..|:|||.:.... |:..|    |:...||.:...|||.:.:...||....|::|||
Zfish   551 GVSVVLFLVSRFSPYEWHTEEPEEGSDGPPSDQPPNEFGIFNSLWFSLGAFMQQGCDFTPRSLSG 615

  Fly   635 RLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPVESLDDLAKQYKILYAPLNGSSAMTYFERMS 699
            |:|...||.|..|||:||||||||||||.|:.:|:||.:|||||.:|.|..|:..|...:|    
Zfish   616 RIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFF---- 676

  Fly   700 NIEQMFYEIWKDLSLNDSLTAVERSKLAVWDYPVSDKYTKMWQAMQEAK---LPATLDEAVARVR 761
                                  .|||:||        |.|||..|:.|:   ...|..|.|||||
Zfish   677 ----------------------RRSKIAV--------YEKMWSYMKSAEPTVFTKTTAEGVARVR 711

  Fly   762 NSTAATGFAFLGDATDIRYL-QLTNCDLQVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLLNKR 825
            .|...  :|||.::|...|. |...||...||.....|.|.:|..:||.|....|.|:|.|....
Zfish   712 KSKGK--YAFLLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATPKGSQLGTPVNLAVLKLSEAG 774

  Fly   826 QLEKLKEKWWKNDEALAKCDKPED------QSDGISIQNIGGVFIVIFVGIGMACITLVFEYWWY 884
            .|:|||.|||.:.   .:|. |:|      .|..:|:.|:.|||.::..|:|:|.:..:.|: .|
Zfish   775 VLDKLKNKWWYDK---GECG-PKDSGSKDKSSQALSLSNVAGVFYILVGGLGLAMLVALVEF-CY 834

  Fly   885 RYRKNPRIIDVAEANAERSNA-ADHPGKL-VDGVILG-------HSGEKFEKSKA 930
            :.|...:.:.:..:.|.|:.| ....|.| .:|.:|.       |||..:....|
Zfish   835 KSRAEAKKLKLTFSEAMRNKARLSITGSLGENGRVLTPDCPKAVHSGPSYRHGPA 889

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 87/462 (19%)
PBP2_iGluR_putative 438..836 CDD:270435 147/413 (36%)
Lig_chan 565..870 CDD:278489 113/319 (35%)
gria4aNP_999971.1 PBP1_iGluR_AMPA_GluR4 23..393 CDD:107383 89/466 (19%)
ANF_receptor 34..375 CDD:279440 80/436 (18%)
PBP2_iGluR_AMPA_GluR4 408..790 CDD:270445 148/421 (35%)
Lig_chan 540..821 CDD:278489 113/320 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591798
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.940

Return to query results.
Submit another query.