DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir25a and GluRIIA

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster


Alignment Length:887 Identity:225/887 - (25%)
Similarity:362/887 - (40%) Gaps:203/887 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 SDAKVLLEAICNKYATSIEKKQTPHLILDTTKSGIASETVKSFTQALGLPTISASYGQQGDLRQW 144
            :|:.:|.:..|...:..:.....|       .|..||:.|.....|.|:|.|      :.||:  
  Fly    76 NDSFLLQQITCELISNGVAAIFGP-------SSKAASDIVAQIANATGIPHI------EYDLK-- 125

  Fly   145 RDLDEAKQKYL-----LQVMPPADIIPEAIRSIVIHMNITNAAILYD-DSFVMDHKYKSLLQNIQ 203
              |:..:|:.|     :.|.|...::..|...| |..|       |: .:|.:.::....|..:|
  Fly   126 --LEATRQEQLNHQMSINVAPSLSVLSRAYFEI-IKSN-------YEWRTFTLIYETPEGLARLQ 180

  Fly   204 TRHVITAIAKDGKREREEQIEKLRNLD--INNFFIL-----GTLQSIRMVL--------ESVKPA 253
            ....|.|:..|        ..|||||.  .:::.||     .|....|::|        |.:|.:
  Fly   181 DLMNIQALNSD--------YVKLRNLADYADDYRILWKETDETFHEQRIILDCEPKTLKELLKVS 237

  Fly   254 Y-------FERNFAWHAITQNEG--EISSQ--RDNATIMFMKPMAYTQY-RDRLGLLRTTYNLNE 306
            .       |...|..|..|.|.|  :|.::  :.|.|.:.:|.:....: |.:..|.:....|..
  Fly   238 IDFKLQGPFRNWFLTHLDTHNSGLRDIYNEDFKANITSVRLKVVDANPFERKKTRLTKVDQILGN 302

  Fly   307 EPQLSSAFY-----FDLALRSFLTIKEML--------QSGAW------PKDMEYLNCDDFQGG-N 351
            :..|....|     |..:.|:.:...:..        .|..|      ..:|:.::.||.:.. .
  Fly   303 QTMLPILIYDAVVLFASSARNVIAAMQPFHPPNRHCGSSSPWMLGAFIVNEMKTISEDDVEPHFK 367

  Fly   352 TPQRNLD---------LRDYFTKITEPTSYGTFDLVTQSTQPFNGHSFMKFEMDINVLQIRGGSS 407
            |....||         |..|...:.||....|         |.||                    
  Fly   368 TENMKLDEYGQRIHFNLEIYKPTVNEPMMVWT---------PDNG-------------------- 403

  Fly   408 VNSKSIGKWISGLNSEL----IVKD-EEQMKNLTADTVYRIFTVVQAPFIMRDE-----TAPKGY 462
                 |.|.:  ||.||    ..:| .||.|      ||.:.|..:.|:.|..|     ...:.|
  Fly   404 -----I
KKRL--LNLELESAGTTQDFSEQRK------VYTVVTHYEEPYFMMKEDHENFRGREKY 455

  Fly   463 KGYCIDLINEIAAIVHFDYTIQEVE-DGKFGNMDENGQWNGIVKKLMDKQADIGLGSMSVMAERE 526
            :||.:|||::::.::.|||....|. :||:.  .|..||:||::||:|..|.||:..:::...|.
  Fly   456 EGYAVDLISKLSELMEFDYEFMIVNGNGKYN--PETKQWDGIIRKLIDHHAQIGVCDLTITQMRR 518

  Fly   527 IVIDFTVPYYDLVGITIM-MQRPSSPSSLFKFLTVLETNVWL-CILAAYFFTSFLMWI----FDR 585
            .|:|||||:..| ||:|: .:.|..|.:.|.||......||: .|.|....|...::|    :..
  Fly   519 SVVDFTVPFMQL-GISILHYKSPPEPKNQFAFLEPFAVEVWIYMIFAQLIMTLAFVFIARLSYRE 582

  Fly   586 WSPYSYQNNREKYKDDEEKREFNLKECLWFCMTSLTPQGGGEAPKNLSGRLVAATWWLFGFIIIA 650
            |.|    .|......||.:..:|:....|..:.|:..||....|:....|::...||.|..::::
  Fly   583 WLP----PNPAIQDPDELENIWNVNNSTWLMVGSIMQQGCDILPRGPHMRILTGMWWFFALMMLS 643

  Fly   651 SYTANLAAFLTVSRLDTPVESLDDLAKQYKILYAPLNGSSAMTYFERMSNIEQMFYEIWKDLSLN 715
            :||||||||||.::..:.::||.||.:|.|:.:..:.|.|...:|...::.:             
  Fly   644 TYTANLAAFLTSNKWQSSIKSLQDLIEQDKVHFGSMRGGSTSLFFSESNDTD------------- 695

  Fly   716 DSLTAVERSKLAVWDYPVSDKYTKMWQAMQE---AKLPATLDEAVARVRNSTAATGFAFLGDATD 777
                                 |.:.|..|::   :...:|..|.|||||....  |:|||.:.|.
  Fly   696 ---------------------YQRAWNQMKDFNPSAFTSTNKEGVARVRKEKG--GYAFLMETTS 737

  Fly   778 IRYLQLTNCDLQVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWWKNDEALA 842
            :.|....||||..:||:...|.|.:||..||..:...:.:||.|..:.:|:|:|.|||||..  .
  Fly   738 LTYNIERNCDLTQIGEQIGEKHYGLAVPLGSDYRTNLSVSILQLSERGELQKMKNKWWKNHN--V 800

  Fly   843 KCDK-PEDQSDGISIQNIGGVFIVIFVGIGMACITLVFEYWW 883
            .||. .|...|.:||..:||||:|:..|:.:..|..:||:.|
  Fly   801 TCDSYHEVDGDELSIIELGGVFLVLAGGVLIGVILGIFEFLW 842

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 81/411 (20%)
PBP2_iGluR_putative 438..836 CDD:270435 121/412 (29%)
Lig_chan 565..870 CDD:278489 90/313 (29%)
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 75/394 (19%)
ANF_receptor 46..386 CDD:279440 68/342 (20%)
PBP2_iGluR_Kainate 426..796 CDD:270432 122/418 (29%)
Lig_chan 556..828 CDD:278489 90/313 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462695
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.840

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