DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir25a and GRIN2D

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_000827.2 Gene:GRIN2D / 2906 HGNCID:4588 Length:1336 Species:Homo sapiens


Alignment Length:615 Identity:144/615 - (23%)
Similarity:245/615 - (39%) Gaps:152/615 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   346 DFQGGNTPQRNLDLRDYFTKIT-EPTSYGTFDLVTQSTQPFNGHSFMKFEMDINVLQIRGGSSVN 409
            |.:..|...|...|..||..|| :...|.           ||...|:   ::.:::.|.......
Human   347 DCRAQNRTHRGESLHRYFMNITWDNRDYS-----------FNEDGFL---VNPSLVVISLTRDRT 397

  Fly   410 SKSIGKWISGLNSELIVKDEEQMKNL--------------TADTVY-RIFTVVQAPFI------- 452
            .:.:|.|            |:|...|              ..||.: .:.|:.:.||:       
Human   398 WEVVGSW------------EQQTLRLKY
PLWSRYGRFLQPVDDTQHLTVATLEERPFVIVEPADP 450

  Fly   453 -----MRDET---------------APKG----YKGYCIDLINEIAAIVHFDYTIQEVEDGKFGN 493
                 :||..               ||:.    .||:|||::..:|..:.|.|.:..|.:||.|.
Human   451 ISGTCIRDSVPCRSQLNRTHSPPPDAPRPEKRCCKGFCIDILKRLAHTIGFSYDLYLVTNGKHGK 515

  Fly   494 MDENGQWNGIVKKLMDKQADIGLGSMSVMAEREIVIDFTVPYYDLVGITIMMQRPSSPSSLFKFL 558
            ..: |.|||::.::..::||:.:||:::..||..::||:||:.: .||::|:.|.:...|...||
Human   516 KID-GVWNGMIGEVFYQRADMAIGSLTINEERSEIVDFSVPFVE-TGISVMVARSNGTVSPSAFL 578

  Fly   559 TVLETNVW-----LCILAAYFFTSFLMWIFDRWSPYSYQNNREKYKDDEEKREFNLKECLW---- 614
            ......||     :|:..    .:..::||:..||..|..:....|..... .|.:.:.:|    
Human   579 EPYSPAVWVMMFVMCLTV----VAVTVFIFEYLSPVGYNRSLATGKRPGGS-TFTIGKSIWLLWA 638

  Fly   615 FCMTSLTPQGGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPVESLDDLAKQY 679
            ....:..|.   |.|:..:.:::...|..|..|.:||||||||||:........|..|.|...|.
Human   639 LVFNNSVPV---ENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYVDTVSGLSDRKFQR 700

  Fly   680 -KILYAPL------NGSSAMTYFERMSNIEQMFYEIWKDLSLNDSLTAVERSKLAVWDYPVSDKY 737
             :..|.||      |||:.       .||..                          :||  |.:
Human   701 PQEQYPPLKFGTVPNGSTE-------KNIRS--------------------------NYP--DMH 730

  Fly   738 TKMWQAMQEAKLPATLDEAVARVRNSTAATGFAFLGDATDIRYLQLTN--CDLQVV--GEEFSRK 798
            :.|.:..|     ..::||:.:::   |....||:.||..:.|:...:  |.|..:  |:.|:..
Human   731 SYMVRYNQ-----PRVEEALTQLK---AGKLDAFIYDAAVLNYMARKDEGCKLVTIGSGKVFATT 787

  Fly   799 PYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWWKNDEALAKCDKPEDQSDGISIQNIGGVF 863
            .|.||:.:||..|...:.|:|..|...::|.|:..|.   ..:...||.|..|..:.|.|:.|||
Human   788 GYGIALHKGSRWKRPIDLALLQFLGDDEIEMLERLWL---SGICHNDKIEVMSSKLDIDNMAGVF 849

  Fly   864 IVIFVGIGMACITLVFE---YWWYRYRKNP 890
            .::.|.:|::.:...:|   ||..|:...|
Human   850 YMLLVAMGLSLLVFAWEHLVYWRLRHCLGP 879

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 15/80 (19%)
PBP2_iGluR_putative 438..836 CDD:270435 110/449 (24%)
Lig_chan 565..870 CDD:278489 78/324 (24%)
GRIN2DNP_000827.2 PBP1_iGluR_NMDA_NR2 49..413 CDD:380601 18/91 (20%)
PBP2_iGluR_NMDA_Nr2 430..830 CDD:270436 108/455 (24%)
Glutamate binding. /evidence=ECO:0000250|UniProtKB:Q00959 539..541 1/1 (100%)
Pore-forming. /evidence=ECO:0000250|UniProtKB:Q00960 631..650 3/21 (14%)