DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir25a and GRIA1

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_001244950.1 Gene:GRIA1 / 2890 HGNCID:4571 Length:916 Species:Homo sapiens


Alignment Length:1021 Identity:263/1021 - (25%)
Similarity:430/1021 - (42%) Gaps:287/1021 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 LFINEVDNEPAAKAVEVVLTYLKKNIRYGLS---------VQLDSIEANKSDAKVLLEAICNKYA 94
            ||.|:...|.||             .|:.||         .|:|.:  |.||:..:....|::::
Human    40 LFPNQQSQEHAA-------------FRFALSQLTEPPKLLPQIDIV--NISDSFEMTYRFCSQFS 89

  Fly    95 TSI------EKKQTPHLILDTTKSGIASETVKSFTQALGLPTISASYGQQGDLRQWRDLDEAKQK 153
            ..:      .:::|.:::             .||..||.:..|:.|:          .:|.:.| 
Human    90 KGVYAIFGFYERRTVNML-------------TSFCGALHVCFITPSF----------PVDTSNQ- 130

  Fly   154 YLLQVMPPADIIPEAIRSIVIHMNITNAAILYDDSFVMDHKYKSLLQNI-----QTRHVITAI-- 211
            ::||:.|.   :.:|:.||:.|........:||..     :..|:||.:     :....:||:  
Human   131 FVLQLRPE---LQDALISIIDHYKWQKFVYIYDAD-----RGLSVLQKVLDTAAEKNWQVTAVNI 187

  Fly   212 ---AKDGKR----EREEQIEKLRNLDINN---FFILGTLQSIRMVLESVKPAYFERN-FAWHAIT 265
               .::|.|    :.|::.|:|..:|..:   ..|||  |.|::          |:| ..:|.|.
Human   188 LTTTEEGYRMLFQDLEKKKERLVVVDCESERLNAILG--QIIKL----------EKNGIGYHYIL 240

  Fly   266 QNEGEISSQRDNATIMFMKPMAYTQYRDRLGLLRTTYNLNEEPQLSSAFYFDLALRSFLTIKEML 330
            .|.|                                             :.|:.|..|   ||  
Human   241 ANLG---------------------------------------------FMDIDLNKF---KE-- 255

  Fly   331 QSGAWPKDMEYLNCDDFQGGNTPQ--RNLDLRDYFTKI----TEPTSYGTFDLVTQSTQPFNGHS 389
             |||.....:.:|..|.......|  :|.|.||: |::    .:.||..|:|.|....:.|  .|
Human   256 -SGANVTGFQLVNYTDTIPAKIMQQWKNSDARDH-TRVDWKRPKYTSALTYDGVKVMAEAF--QS 316

  Fly   390 FMKFEMDIN-------------------------VLQIR-----GGSSVNSK------------- 411
            ..:..:||:                         :.|:|     |....|.|             
Human   317 LRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEM 381

  Fly   412 ------SIGKW------ISGLNSELIVKDEEQMKNLTADTVYRIFTVVQAPFIMRDETAPK---- 460
                  .||.|      :..........|...::|.|    |.:.|:::.|::|..:.|.:    
Human   382 KHDGIRKIGYWNEDDKFVPAATDAQAGGDNSSVQNRT----YIVTTILEDPYVMLKKNANQFEGN 442

  Fly   461 -GYKGYCIDLINEIAAIVHFDYTIQEVEDGKFGNMD-ENGQWNGIVKKLMDKQADIGLGSMSVMA 523
             .|:|||::|..|||..|.:.|.::.|.|||:|..| :...|||:|.:|:..:||:.:..:::..
Human   443 DRYEGYCVELAAEIAKHVGYSYRLEIVSDGKYGARDPDTKAWNGMVGELVYGRADVAVAPLTITL 507

  Fly   524 EREIVIDFTVPYYDLVGITIMMQRP-SSPSSLFKFLTVLETNVWLCILAAYFFTSFLMWIFDRWS 587
            .||.||||:.|:..| ||:||:::| .|...:|.||..|...:|:||:.||...|.::::..|:|
Human   508 VREEVIDFSKPFMSL-GISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFS 571

  Fly   588 PYSYQNNR-EKYKD---DEEKREFNLKECLWFCMTSLTPQGGGEAPKNLSGRLVAATWWLFGFII 648
            ||.:.:.. |:.:|   .::..||.:...|||.:.:...||...:|::||||:|...||.|..||
Human   572 PYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLII 636

  Fly   649 IASYTANLAAFLTVSRLDTPVESLDDLAKQYKILYAPLNGSSAMTYFERMSNIEQMFYEIWKDLS 713
            |:||||||||||||.|:.:|:||.:|||||.:|.|..|...|...:|                  
Human   637 ISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLEAGSTKEFF------------------ 683

  Fly   714 LNDSLTAVERSKLAVWDYPVSDKYTKMWQAMQEAKLPA----TLDEAVARVRNSTAATGFAFLGD 774
                    .|||:||::        |||..|:.|: |:    |.:|.:.|||.|...  :|:|.:
Human   684 --------RRSKIAVFE--------KMWTYMKSAE-PSVFVRTTEEGMIRVRKSKGK--YAYLLE 729

  Fly   775 ATDIRYL-QLTNCDLQVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWWKND 838
            :|...|: |...||...||.....|.|.||..:||.|::..|.|:|.|..:..|:|||.|||.:.
Human   730 STMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRNPVNLAVLKLNEQGLLDKLKNKWWYDK 794

  Fly   839 EALAKCDK----PEDQSDGISIQNIGGVFIVIFVGIGMACITLVFEYWWYRYRKNPR------II 893
               .:|..    .:|::..:|:.|:.|||.::..|:|:|.:..:.|: .|:.|...:      :|
Human   795 ---GECGSGGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLVALIEF-CYKSRSESKRMKGFCLI 855

  Fly   894 DVAEANAERSNAADHPGKLVDGVILGHSGEK-------FEKSKAAL 932
            .....| |....:..|.....|...|.|||.       |.||..::
Human   856 PQQSIN-EAIRTSTLPRNSGAGASSGGSGENGRVVSHDFPKSMQSI 900

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 87/479 (18%)
PBP2_iGluR_putative 438..836 CDD:270435 146/413 (35%)
Lig_chan 565..870 CDD:278489 108/317 (34%)
GRIA1NP_001244950.1 PBP1_iGluR_AMPA_GluR1 36..399 CDD:107385 88/471 (19%)
ANF_receptor 47..382 CDD:279440 82/447 (18%)
PBP2_iGluR_AMPA_GluR1 416..797 CDD:270447 149/425 (35%)
Lig_chan 548..827 CDD:278489 108/318 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156065
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.840

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