DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir25a and Grik4

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_036704.1 Gene:Grik4 / 24406 RGDID:2734 Length:956 Species:Rattus norvegicus


Alignment Length:942 Identity:249/942 - (26%)
Similarity:413/942 - (43%) Gaps:178/942 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PKTSKIL-----WLLGFLSLLSSFSLEIAAQTTQNINVLFINEVDNEP--AAKAVEVVLTYLKKN 63
            |:.|..|     |||  :...|..||.|||             :.::|  .::...:.:|..|..
  Rat     2 PRVSAPLVLLPAWLL--MVACSPHSLRIAA-------------ILDDPMECSRGERLSITLAKNR 51

  Fly    64 I-----RYG-LSVQLDSIEANKSDAKVLLEAICNKYATSIEKKQTPHLILDTTKSGIASETVKSF 122
            |     |.| ..|::|..|..:.......|.:|......:.....|       .|..||.::   
  Rat    52 INRAPERLGKAKVEVDIFELLRDSEYETAETMCQILPKGVVAVLGP-------SSSPASSSI--- 106

  Fly   123 TQALGLPTISASYGQQGDLRQWRDLDEAKQKYLLQVMPPADIIPE------AIRSIVIHMNITNA 181
                    ||...|:: ::..::...|...::.||.....::.|.      |:..|:...|.|.|
  Rat   107 --------ISNICGEK-EVPHFKVAPEEFVRFQLQRFTTLNLHPSNTDISVAVAGILNFFNCTTA 162

  Fly   182 AILYDDSFVMDHKYKSLLQNIQTRHVITAIAKDGKREREEQIEKLRNLDINNFFILGTLQSIRMV 246
            .::...:..:.:..|.|.|.:.::..::....|..|:....::::|:.......|.........:
  Rat   163 CLICAKAECLLNLEKLLRQFLISKDTLSVRMLDDTRDPTPLLKEIRDDKTATIIIHANASMSHTI 227

  Fly   247 LESVKPAYFERNFAWHAITQNEGEISSQR------DNATIM----FMKPMAYTQYRDRLGLLRTT 301
            |  :|.|......|::.......|.|.||      |...|:    |.:..|:.|        ..:
  Rat   228 L--LKAAELGMVSAYYTYIFTNLEFSLQRMDSLVDDRVNILGFSIFNQSHAFFQ--------EFS 282

  Fly   302 YNLNEE------------PQLSSAFYFDLALRSFLTIKEMLQS---GAWPKDMEYLNCDDFQGGN 351
            .:||:.            |.||||..||........::|:.:|   |..|     |:|...|   
  Rat   283 QSLNQSWQENCDHVPFTGPALSSALLFDAVYAVVTAVQELNRSQEIGVKP-----LSCGSAQ--- 339

  Fly   352 TPQRNLDLRDYFTKITEPTSYGTFDLVTQSTQPFNGHSFMKFEMDINVLQI-RGGSSVNSKSIGK 415
            ..|....|.:|...:......|..:        ||... .:....:.:||. |.|    .:.||:
  Rat   340 IWQHGTSLMNYLRMVELEGLTGHIE--------FNSKG-QRSNYALKILQFTRNG----FRQIGQ 391

  Fly   416 W--ISGLNSELIVKDEEQMKNLTADTVYR----IFTVVQAPFIM-----RDETAPKGYKGYCIDL 469
            |  ..||:     .|.....:..:|:::.    :.|:::.|::|     :|......|:|:|:|:
  Rat   392 WHVAEGLS-----MDSRLYASNISDSLFNTTLVVTTILENPYLMLKGNHQDMEGNDRYEGFCVDM 451

  Fly   470 INEIAAIVHFDYTIQEVEDGKFGNMDENGQWNGIVKKLMDKQADIGLGSMSVMAEREIVIDFTVP 534
            :.|:|.|:.|:|.|:.|.||.:|..:.||.|.|:|.:|:.::||:.:..:::.||||.||||:.|
  Rat   452 LKELAEILRFNYKIRLVGDGVYGVPEANGTWTGMVGELIARKADLAVAGLTITAEREKVIDFSKP 516

  Fly   535 YYDLVGITI-----MMQRPSSPSSLFKFLTVLETNVWLCILAAYFFTSFLMWIFDRWSPYSYQNN 594
            :..| ||:|     |.:||    ..|.||......|||.:|.||...|.::::..|.:||.:.:.
  Rat   517 FMTL-GISILYRVHMGRRP----GYFSFLDPFSPGVWLFMLLAYLAVSCVLFLVARLTPYEWYSP 576

  Fly   595 R--EKYKDDEEKREFNLKECLWFCMTSLTPQGGGEAPKNLSGRLVAATWWLFGFIIIASYTANLA 657
            .  .:.:.:....:::|...|||.:.....||...||:.||.|.|:..||.|..|||:|||||||
  Rat   577 HPCAQGRCNLLVNQYSLGNSLWFPVGGFMQQGSTIAPRALSTRCVSGVWWAFTLIIISSYTANLA 641

  Fly   658 AFLTVSRLDTPVESLDDLAKQYKILYAPLNGSSAMTYFERMSNIEQMFYEIWKDLSLNDSLTAVE 722
            |||||.|::.|:||:||||.|..|.|..::|.|:||:|:   |.....|:               
  Rat   642 AFLTVQRMEVPIESVDDLADQTAIEYGTIHGGSSMTFFQ---NSRYQTYQ--------------- 688

  Fly   723 RSKLAVWDYPVSDKYTKMWQAMQEAKLPATLDEAVARVRNSTAATGFAFLGDATDIRYLQLTNCD 787
                .:|:|    .|:|     |.:....:.:|.:|||.||    .:|||.::|...|.:..||:
  Rat   689 ----RMWNY----MYSK-----QPSVFVKSTEEGIARVLNS----NYAFLLESTMNEYYRQRNCN 736

  Fly   788 LQVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWWKNDEALAKCDKPED-QS 851
            |..:|.....|.|.|.:..||..:|:|:.|||.|....:||.||.|||:.    .||.|.|| ::
  Rat   737 LTQIGGLLDTKGYGIGMPVGSVFRDEFDLAILQLQENNRLEILKRKWWEG----GKCPKEEDHRA 797

  Fly   852 DGISIQNIGGVFIVIFVGIGMACITLVFEYWW 883
            .|:.::||||:|:|:..|:.:|....:.|:.|
  Rat   798 KGLGMENIGGIFVVLICGLIVAIFMAMLEFLW 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 78/427 (18%)
PBP2_iGluR_putative 438..836 CDD:270435 141/413 (34%)
Lig_chan 565..870 CDD:278489 108/307 (35%)
Grik4NP_036704.1 Periplasmic_Binding_Protein_type1 24..402 CDD:415822 83/445 (19%)
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 140/409 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349690
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.840

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