DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir25a and Grin3a

DIOPT Version :10

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_001263284.1 Gene:Grin3a / 242443 MGIID:1933206 Length:1135 Species:Mus musculus


Alignment Length:959 Identity:198/959 - (20%)
Similarity:359/959 - (37%) Gaps:281/959 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 FINEVDNEPAAKAVEVVLTYLKKNIRYGLSVQLDSIEANKSDAKVLLEAICNKYATSIEKKQTP- 103
            |:..|.:....:.|..:|.:.:..   |..::||           |:.::.:....||.:.:.| 
Mouse   180 FLQSVCHTVVVQGVSALLAFPQSQ---GEMMELD-----------LVSSVLHIPVLSIVRHEFPR 230

  Fly   104 --------HLILDTTKSGIASETVKSFTQALGLPTISASYG-------QQGDLRQWRDLDEAKQK 153
                    .|.|:.:.|..|..||       .:.|::..|.       :..::..:..|.|...|
Mouse   231 ESQNPLHLQLSLENSLSSDADVTV-------SILTMNNWYNFSLLLCQEDWNITDFLLLTENNSK 288

  Fly   154 YLLQVMPPADIIPEAIRSIVIHMNITNAAILYDDSFVMDHKYKSLLQNIQTRHVITAIAKDGKRE 218
            :.|          |:|.:|..:::.|                |.||..:|.              
Mouse   289 FHL----------ESIINITANLSST----------------KDLLSFLQV-------------- 313

  Fly   219 REEQIEKLRNLDINNFFILGTLQSIRMVLE-SVKPAYFERNFAW-HAITQNEGEISSQRDNATIM 281
               |:|.:||...........:.|||.:.| |.:......:..| ...:||..|:.::.      
Mouse   314 ---QLENIRNSTPTMVMFGCDMGSIRQIFEMSTQFGLSPPDLHWVLGDSQNVEELRTEG------ 369

  Fly   282 FMKPMAYTQYRDRLGLL---RTTYNLNEEPQLSSAFY----FDLALRSFLTIKEMLQS--GAWPK 337
              .|         |||:   :||.::.|       :|    .:|..|:..| ..|:|.  ...|.
Mouse   370 --LP---------LGLIAHGKTTQSVFE-------YYVQDAMELVARAVAT-ATMIQPELALLPS 415

  Fly   338 DMEYLNCDDFQGGNTPQRNLDLRDYFTKITEPTSYGTFDLVTQSTQPFNGHSFMKFEMDINVLQI 402
            .|   ||.|.:     ..||....|.::....|:             |.|.|        ..:::
Mouse   416 TM---NCMDVK-----TTNLTSGQYLSRFLANTT-------------FRGLS--------GSIKV 451

  Fly   403 RGGSSVNSKS-------------------IGKWISGLNSELIVKD-----EEQMKNLT----ADT 439
            :|.:.|:|::                   :|.|..|    .||.|     |:..::.|    .:.
Mouse   452 KGSTIVSSENNFFIWNLQYDPMGKPMWTRLGSWQGG----RIVMDSGIW
PEQAQRHKTHFHHPNK 512

  Fly   440 VY-RIFTVVQAPFIM------------------------------------RDETAPKGYK---- 463
            :: |:.|:::.||:.                                    .::|.|..:|    
Mouse   513 LHLRVVTLIEHPFVFTREVDDEGLCPAGQLCLDPMTNDSSILDSLFSSLHSSNDTVPIKFKKCCY 577

  Fly   464 GYCIDLINEIAAIVHFDYTIQEVEDGKFGNMDENGQWNGIVKKLMDKQADIGLGSMSVMAEREIV 528
            ||||||:.::|..::||:.:..|.|||:|.. :||.|.|:|..|:...|::.:.|.|:...|..|
Mouse   578 GYCIDLLEQLAEDMNFDFDLYIVGDGKYGAW-KNGHWTGLVGDLLSGTANMAVTSFSINTARSQV 641

  Fly   529 IDFTVPYYDL-VGITIMMQRPSSPSSLFKFLTVLETNVWLCILAAYFFTSFLMWIFDRWSPYSYQ 592
            ||||.|::.. :||.:..:..::|  :..|:..|...:||.|..|...|:..:.:::..||:...
Mouse   642 IDFTSPFFSTSLGILVRTRDTAAP--IGAFMWPLHWTMWLGIFVALHITAIFLTLYEWKSPFGMT 704

  Fly   593 ---NNREKYKDDEEKREFNLKECLWFCMTSLTPQGGG-EAPKNLSGRLVAATWWLFGFIIIASYT 653
               .||.|.        |:....|..|...|..:... :.||..:||.:...|.:|....:::||
Mouse   705 PKGRNRNKV--------FSFSSALNVCYALLFGRTAAIKPPKCWTGRFLMNLWAIFCMFCLSTYT 761

  Fly   654 ANLAAFLTVSRLDTPVESLDDLAKQYKILYAPLNGSSAMTYFERMSNIEQMFYEIWKDLSLNDSL 718
            |||||.:...::...:..:.|     ..|:.|..|.       |...:.:...|           
Mouse   762 ANLAAVMVGEKIYEELSGIHD-----PKLHHPSQGF-------RFGTVRESSAE----------- 803

  Fly   719 TAVERSKLAVWDYPVSDKYTKMWQAMQEAKLPATLDEAVARVRNSTAATGFAFLGDATDIRY-LQ 782
                       || |...:.:|.:.|:...:|||.| .|..::|...... ||:.|...:.| :.
Mouse   804 -----------DY-VRQSFPEMHEYMRRYNVPATPD-GVQYLKNDPEKLD-AFIMDKALLDYEVS 854

  Fly   783 L-TNCDLQVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWWKNDEALAKCDK 846
            : .:|.|..||:.|:.:.|.|.:...|.|....:..|....:...::.|.:||:|    :..|.|
Mouse   855 IDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYK----VVPCGK 915

  Fly   847 PE---DQSDGISIQNIGGVFIVIFVGIGMACITLVFEYWWYRYRKNPRI 892
            ..   .::..:.|::..|:|:::.:|.|::.:|.:.|:..||... |||
Mouse   916 RSFAVTETLQMGIKHFSGLFVLLCIGFGLSILTTIGEHIVYRLLL-PRI 963

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 37..418 CDD:380606 74/423 (17%)
PBP2_iGluR_putative 438..836 CDD:270435 103/445 (23%)
Grin3aNP_001263284.1 PBP1_iGluR_NMDA_NR3 40..496 CDD:380600 78/437 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 59..118
PBP2_iGluR_NMDA_Nr3 512..908 CDD:270438 102/443 (23%)
Lig_chan 674..941 CDD:459656 67/315 (21%)
PPP2CB binding site. /evidence=ECO:0000250|UniProtKB:Q9R1M7 951..987 6/14 (43%)
GIT1-binding. /evidence=ECO:0000250|UniProtKB:Q9R1M7 1082..1115
Blue background indicates that the domain is not in the aligned region.

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