DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir25a and gria3a

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:XP_005165152.1 Gene:gria3a / 170452 ZFINID:ZDB-GENE-020125-5 Length:903 Species:Danio rerio


Alignment Length:908 Identity:251/908 - (27%)
Similarity:397/908 - (43%) Gaps:199/908 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ILMNPKTSKILWLLGFLSLLSSFSLEIAAQTTQNINVLFINEVDNEPAAKAVEVVLTYLKKNIR- 65
            :|:.|      ||:  |...:.|..:|      ||..||:.....|.:|....|.|....:||. 
Zfish     9 VLLLP------WLV--LQTQAGFPNQI------NIGGLFMRSTVQEHSAFRFAVQLYNTNQNITE 59

  Fly    66 --YGLSVQLDSIEANKSDAKVLLEAICNKYATSI-------EKKQTPHLILDTTKSGIASETVKS 121
              :.|:..:|::|::.|.:  :..|.|::::..:       :::              :..|:.|
Zfish    60 KPFHLNYNVDNLESSNSFS--VTHAFCSQFSRGVYAIFGFYDRR--------------SMNTLTS 108

  Fly   122 FTQALGLPTISASYGQQGDLRQWRDLDEAKQKYLLQVMPPADIIPEAIRSIVIHMNITNAAILYD 186
            |..||....|:.|:....|:           :::||:.|.   :..|:.|::.|........|||
Zfish   109 FCGALHTSFITPSFPTDTDV-----------QFVLQMRPS---LRGALLSLLAHYKWEKFVYLYD 159

  Fly   187 DSFVMDHKYKSLLQNIQTRHV-----ITAIAKDG---KREREEQIEKLRNLDINNFFILGTLQSI 243
                .|..: |:||.|....|     :||.:...   ..|....||::.......|.|...::.|
Zfish   160 ----TDRGF-SILQAIMESAVMNNWQVTARSVGNIVDPLEYRRIIEEMDRRQEKRFLIDCEVERI 219

  Fly   244 RMVLESVKPAYFERNFAWHAITQNEG-------EISSQRDNAT-IMFMKP-----MAYTQYRDRL 295
            ..:||.|..| .:.:..:|.|..|.|       ::.|...|.| ...:.|     ..:.|..:||
Zfish   220 NSILEQVVIA-GKNSRGYHYILANLGFTNMSLDKVFSGGANITGFQIINPDSPIVQQFLQRWERL 283

  Fly   296 ----------GLLRTTYNLNEEPQLSSAFYFDLALRSFLTIKEMLQSG--------AWPKDMEY- 341
                      ..|:.|..|..:..|..|..|....|..:.|.....:|        .|.:.::. 
Zfish   284 DEREFPESRSSPLKYTSALTHDAILVIAEAFRYLRRQRVDISRRGSAGDCLANPAVPWSQGIDIE 348

  Fly   342 --LNCDDFQG--GNTPQRNLDLRDYFTKITEPTSYGTFDLVTQSTQPFNGHSFMKFEMDINVLQI 402
              |.....||  ||....:...|..:|                                ::|.::
Zfish   349 RALKMVQVQGMTGNIQFDSFGRRSNYT--------------------------------VDVYEM 381

  Fly   403 RGGSSVNSKSIGKWISGLNSELIVKDEEQMKNLTADTVYR---IFTVVQAPFIM--RDETAPKG- 461
            :.|   .::.||.|........||  |:|:.|.::....|   :.|:::||::|  |:....:| 
Zfish   382 KPG---GARKIGYWNEFEKFVYIV--EQQVTNESSSVENRTIVVTTIMEAPYVMYKRNYMQLEGN 441

  Fly   462 --YKGYCIDLINEIAAIVHFDYTIQEVEDGKFGNMD-ENGQWNGIVKKLMDKQADIGLGSMSVMA 523
              |:|||:||.:|||..|...|.:..|.|||:|..| |...|||:|.:|:..:|||.:..:::..
Zfish   442 DRYEGYCVDLASEIAKHVGIKYKLSIVADGKYGARDPETKTWNGMVGELVYGRADIAVAPLTITL 506

  Fly   524 EREIVIDFTVPYYDLVGITIMMQRP-SSPSSLFKFLTVLETNVWLCILAAYFFTSFLMWIFDRWS 587
            .||.||||:.|:..| ||:||:::| .|...:|.||..|...:|:||:.||...|.::::..|:|
Zfish   507 VREEVIDFSKPFMSL-GISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFS 570

  Fly   588 PYSYQ-NNREKYKD----DEEKREFNLKECLWFCMTSLTPQGGGEAPKNLSGRLVAATWWLFGFI 647
            ||.:. ::.|:.||    .:...:|.:...|||.:.:...||...:|::||||:|...||.|..|
Zfish   571 PYEWHLDDNEETKDPQTPPDPPNDFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLI 635

  Fly   648 IIASYTANLAAFLTVSRLDTPVESLDDLAKQYKILYAPLNGSSAMTYFERMSNIEQMFYEIWKDL 712
            ||:||||||||||||.|:.:|:||.:|||||.:|.|..|:..|...:|                 
Zfish   636 IISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFF----------------- 683

  Fly   713 SLNDSLTAVERSKLAVWDYPVSDKYTKMWQAMQEAKLPA----TLDEAVARVRNSTAATGFAFLG 773
                     .|||:||        |.|||..|:.|: |:    |..:.|||||.|...  ||||.
Zfish   684 ---------RRSKIAV--------YEKMWSYMKSAE-PSVFVKTTPDGVARVRKSKGK--FAFLL 728

  Fly   774 DATDIRYL-QLTNCDLQVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWW 835
            ::|...|: |...||...||.....|.|.:|..:||.|:...|.|:|.|..:..|:|||.|||
Zfish   729 ESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALRTPVNLAVLKLSEQGILDKLKNKWW 791

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 81/439 (18%)
PBP2_iGluR_putative 438..836 CDD:270435 155/418 (37%)
Lig_chan 565..870 CDD:278489 104/281 (37%)
gria3aXP_005165152.1 PBP1_iGluR_AMPA_GluR3 28..399 CDD:107382 84/441 (19%)
ANF_receptor 39..382 CDD:279440 76/410 (19%)
PBP2_iGluR_AMPA 415..797 CDD:270433 155/415 (37%)
Lig_chan 547..810 CDD:278489 104/282 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591888
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.840

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