DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir25a and Grin2c

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:XP_017169765.1 Gene:Grin2c / 14813 MGIID:95822 Length:1307 Species:Mus musculus


Alignment Length:941 Identity:206/941 - (21%)
Similarity:353/941 - (37%) Gaps:253/941 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 PHLILDTTKSGIASETVKSFTQALGLPTISASYGQQGDLRQWRDLDEAKQKYL---LQVMP---- 160
            |.|:|.:.....|........||:   |::..:|..|.|:.........|.:|   |::.|    
Mouse    69 PALLLTSLLGAWAGLGAGQGEQAV---TVAVVFGSSGPLQAQARTRLTPQNFLDLPLEIQPLTIG 130

  Fly   161 -----PADIIPE--------AIRSIVIHMNITNAAILYDDSFVMDHKYKSLLQNIQTRHVITAIA 212
                 |:.|:.:        .:..||...|:...|:.....||....:..:|.......|:....
Mouse   131 VNNTNPSSILTQICGLLGAARVHGIVFEDNVDTEAVAQLLDFVSSQTHVPILSISGGSAVVLTPK 195

  Fly   213 KDGKR--------EREEQI--EKLRNLDINNFFILGTLQ-SIRMVLESVKPAYFERNFAWHAITQ 266
            :.|..        |::.|:  :.|...|.:.|.::.:|. ...:.||.|:........:|..:..
Mouse   196 EPGSAFLQLGVSLEQQLQVLFKVLEEYDWSAFAVITSLHPGHALFLEGVRAVADASYLSWRLLDV 260

  Fly   267 NEGEIS-----------------------SQRDNATIMFMKPMAYTQYRDRLGLLRTTY-----N 303
            ...|:.                       ..|:.|.::|.:..       :.||:...:     |
Mouse   261 LTLELGPGGPRARTQRLLRQVDAPVLVAYCSREEAEVLFAEAA-------QAGLVGPGHVWLVPN 318

  Fly   304 L----NEEPQLSSAFYFDLALRSFLT----------IKE---MLQSGAWPKDMEY-------LNC 344
            |    .:.|..:    |.:.|.|.:|          :::   :|..||.....:|       .:|
Mouse   319 LALGSTDAPPAA----FPVGLISVVTESWRLSLRQKVRDGVAILALGAHSYRRQYGTLPAPAGDC 379

  Fly   345 DDFQGGNTPQRNLDLRDYFTKIT---EPTSYGTFDLVTQSTQ---PFNGHSFMKFEMDINVLQIR 403
            ....|..:|.|....| :...:|   ...|:.....:.|.|.   ..|.|..  :||        
Mouse   380 RSHPGPVSPAREAFYR-HLLNVTWEGRDFSFSPGGYLVQPTMVVIALNRHRL--WEM-------- 433

  Fly   404 GGSSVNSKSIGKWISGL------------NSELIVKDEEQMKNLTADTV-YRIFTVVQAP----- 450
                     :|:|..|:            .|...|.|.   ::||..|: .|.|.:|::|     
Mouse   434 ---------VGRWDHGVLYMKYPVWPRYSTSLQPVVDS---RHLTVATLEERPFVIVESPDPGTG 486

  Fly   451 ----------------FIMRDETAPKGY-----KGYCIDLINEIAAIVHFDYTIQEVEDGKFGNM 494
                            |...|.|.   |     ||:|||::.::|.:|.|.|.:..|.:||.|..
Mouse   487 GCVPNTVPCRRQSNHTFSSGDITP---YTKLCCKGFCIDILKKLAKVVKFSYDLYLVTNGKHGKR 548

  Fly   495 DENGQWNGIVKKLMDKQADIGLGSMSVMAEREIVIDFTVPYYDLVGITIMMQRPSSPSSLFKFLT 559
             ..|.|||::.::..|:||:.:||:::..||..:|||:||:.: .||::|:.|.:...|...||.
Mouse   549 -VRGVWNGMIGEVYYKRADMAIGSLTINEERSEIIDFSVPFVE-TGISVMVARSNGTVSPSAFLE 611

  Fly   560 VLETNVW-----LCILAAYFFTSFLMWIFDRWSPYSYQNNREKYKDDEEKREFNLKECLW----F 615
            .....||     :|:..    .:..:::|:.:||.||..|..|.|..... .|.:.:.:|    .
Mouse   612 PYSPAVWVMMFVMCLTV----VAITVFMFEYFSPVSYNQNLTKGKKSGGP-SFTIGKSVWLLWAL 671

  Fly   616 CMTSLTPQGGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPVESLDDLAKQY- 679
            ...:..|.   |.|:..:.:::...|..|..|.:||||||||||:...:....|..|.|  |:: 
Mouse   672 VFNNSVPI---ENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSD--KKFQ 731

  Fly   680 --KILYAPL------NGSSAMTYFER--MSNIEQMFYEIWK--DLSLNDSLTAVERSKLAVWDYP 732
              :..|.|.      |||:     ||  .||...|...:.|  ..|:.|:||:::          
Mouse   732 RPQDQYPPFRFGTVPNGST-----ERNIRSNYRDMHTHMVKFNQRSVEDALTSLK---------- 781

  Fly   733 VSDKYTKMWQAMQEAKLPATLDEAVARVRNSTAATGFAFLGDATDIRYL--QLTNCDLQVV--GE 793
                       |....:...||               ||:.||..:.|:  :...|.|..:  |:
Mouse   782 -----------MGARHVSRKLD---------------AFIYDAAVLNYMAGKDEGCKLVTIGSGK 820

  Fly   794 EFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWWKNDEALAKCDKPEDQSDGISIQN 858
            .|:...|.||:|:.||.|...:.|:|..|...:.:||:..|.   ..:...:|.|..|..:.|.|
Mouse   821 VFATTGYGIAMQKDSHWKRAIDLALLQFLGDGETQKLETVWL---SGICHNEKNEVMSSKLDIDN 882

  Fly   859 IGGVFIVIFVGIGMACITLVFE---YWWYRY 886
            :.|||.::.|.:|:|.:...:|   ||..|:
Mouse   883 MAGVFYMLLVAMGLALLVFAWEHLVYWKLRH 913

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 69/423 (16%)
PBP2_iGluR_putative 438..836 CDD:270435 118/450 (26%)
Lig_chan 565..870 CDD:278489 82/330 (25%)
Grin2cXP_017169765.1 PBP1_iGluR_NMDA_NR2 90..446 CDD:380601 64/389 (16%)
PBP2_iGluR_NMDA_Nr2 462..868 CDD:270436 120/467 (26%)
NMDAR2_C 905..>980 CDD:371139 3/9 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846690
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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