DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir25a and Grin2a

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_032196.2 Gene:Grin2a / 14811 MGIID:95820 Length:1464 Species:Mus musculus


Alignment Length:1000 Identity:204/1000 - (20%)
Similarity:365/1000 - (36%) Gaps:308/1000 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 LSVQLDSIEANKSDAKVLLEAICNKYATSIEKKQTPHLIL--DTTKSGIASE----TVKSFTQAL 126
            |.|.:.::..|::|.|.|:..:|:..:.:    :...|:.  ||.:..:|..    :.::|...|
Mouse    65 LDVNVVALLMNRTDPKSLITHVCDLMSGA----RIHGLVFGDDTDQEAVAQMLDFISSQTFIPIL 125

  Fly   127 GL------------PT-----ISASYGQQGDLRQWRDLDEAKQKYLLQVMPPAD---------II 165
            |:            ||     ..||..||..:             :|::|...|         |.
Mouse   126 GIHGGASMIMADKDPTSTFFQFGASIQQQATV-------------MLKIMQDYDWHVFSLVTTIF 177

  Fly   166 PEAIRSIV--IHMNITNAAILYD-------DSFVMDHKYKSLLQNIQTRHVITAIAKDGKREREE 221
            | ..|..:  |...:.|:.:.:|       |:...|.|.:..|:.|.:..::...:||   |...
Mouse   178 P-GYRDFISFIKTTVDNSFVGWDMQNVITLDTSFEDAKTQVQLKKIHSSVILLYCSKD---EAVL 238

  Fly   222 QIEKLRNLDINNFFILGTLQSIRMVLESVKPAYFERNFAWHAITQNEGEISSQRDNATIMFMKPM 286
            .:.:.|:|.:..:.....:.|:......:.|..|.....  :::.::.:.|.:            
Mouse   239 ILSEARSLGLTGYDFFWIVPSLVSGNTELIPKEFPSGLI--SVSYDDWDYSLE------------ 289

  Fly   287 AYTQYRDRLGLLRTT------------------YNLNEEPQLSSAFYFDLALRSFLTIKEMLQSG 333
              .:.||.||:|.|.                  |...|:|:           ....|:.:.:.:.
Mouse   290 --ARVRDGLGILTTAASSMLEKFSYIPEAKASCYGQTEKPE-----------TPLHTLHQFMVNV 341

  Fly   334 AWP-KDMEYLNCDDFQGGNTPQRNLDLRDYFTKITEPTSYGTFDLVTQSTQPFNGHSFMKFEMDI 397
            .|. ||:.:                            |..|                   :::..
Mouse   342 TWDGKDLSF----------------------------TEEG-------------------YQVHP 359

  Fly   398 NVLQIRGGSSVNSKSIGKWISGLNSELIVKDEEQMKNL---------------TADTVYRIFTVV 447
            .::.|........:.:|||            |.|..:|               ..|....|.|:.
Mouse   360 RLVVIVLNKDREWEKVGKW------------ENQTLSLRHAVWPR
YKSFSDCEPDDNHLSIVTLE 412

  Fly   448 QAPFIMRDETAP-----------------------------KGYKGYCIDLINEIAAIVHFDYTI 483
            :|||::.::..|                             |..||:|||::.:::..|.|.|.:
Mouse   413 EAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDL 477

  Fly   484 QEVEDGKFGNMDENGQWNGIVKKLMDKQADIGLGSMSVMAEREIVIDFTVPYYDLVGITIMMQRP 548
            ..|.:||.|. ..|..|||::.:::.::|.:.:||:::..||..|:||:||:.: .||::|:.|.
Mouse   478 YLVTNGKHGK-KVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVE-TGISVMVSRS 540

  Fly   549 SSPSSLFKFLTVLETNVWLCILAAYFFTSFL-MWIFDRWSPYSYQNNREKYKDDEEKREFNLKEC 612
            :...|...||.....:||:.:.......|.: :::|:.:||..|..|..|.|..... .|.:.:.
Mouse   541 NGTVSPSAFLEPFSASVWVMMFVMLLIVSAIAVFVFEYFSPVGYNRNLAKGKAPHGP-SFTIGKA 604

  Fly   613 LWFCM-----TSLTPQGGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPVESL 672
            :|...     .|:..|.    ||..:.:::.:.|..|..|.:||||||||||:........|..|
Mouse   605 IWLLWGLVFNNSVPVQN----PKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEFVDQVTGL 665

  Fly   673 DDLAKQYKILYAP-------LNGSSAMTYFERMSNIEQMFYEIWKDLSLNDSLTAVERSKLAVWD 730
            .|...|....|:|       .|||:     ||  ||..                          :
Mouse   666 SDKKFQRPHDYSPPFRFGTVPNGST-----ER--NIRN--------------------------N 697

  Fly   731 YPVSDKY-TKMWQAMQEAKLPATLDEAVARVRNSTAATG--FAFLGDATDIRYL--QLTNCDLQV 790
            ||...:| ||..|        ..:::|:..::     ||  .||:.||..:.|.  :...|.|..
Mouse   698 YPYMHQYMTKFNQ--------RGVEDALVSLK-----TGKLDAFIYDAAVLNYKAGRDEGCKLVT 749

  Fly   791 VGEE--FSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWWKNDEALAKCDKPEDQSDG 853
            :|..  |:...|.||:|:||..|.|.:.|:|..:...::|:|:..|.   ..:...:|.|..|..
Mouse   750 IGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWL---TGICHNEKNEVMSSQ 811

  Fly   854 ISIQNIGGVFIVIFVGIGMACITLVFE---YWWYRYRKNPRIIDVAEANAERSNAADHPGKLVD- 914
            :.|.|:.|||.::...:.::.||.::|   ||..|:             ......:|.||.|.. 
Mouse   812 LDIDNMAGVFYMLAAAMALSLITFIWEHLFYWKLRF-------------CFTGVCSDRPGLLFSI 863

  Fly   915 --GVILGHSGEKFEKSKAALRPRFN 937
              |:.....|...|:.|.:  |.||
Mouse   864 SRGIYSCIHGVHIEEKKKS--PDFN 886

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 62/417 (15%)
PBP2_iGluR_putative 438..836 CDD:270435 114/446 (26%)
Lig_chan 565..870 CDD:278489 81/324 (25%)
Grin2aNP_032196.2 PBP1_iGluR_NMDA_NR2 32..392 CDD:107373 65/433 (15%)
PBP2_iGluR_NMDA_Nr2 403..802 CDD:270436 114/454 (25%)
HisJ <458..>541 CDD:223904 29/84 (35%)
Lig_chan 556..828 CDD:278489 81/325 (25%)
NMDAR2_C 839..1464 CDD:287527 13/62 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846475
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.930

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