DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir25a and grik1

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:XP_004912220.1 Gene:grik1 / 100493949 XenbaseID:XB-GENE-957124 Length:928 Species:Xenopus tropicalis


Alignment Length:1023 Identity:270/1023 - (26%)
Similarity:439/1023 - (42%) Gaps:238/1023 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LLGFLSLLSSFSLEIAAQTTQNINVLFINEVDNEP---AAKAVEVVLTYLKKN--------IRYG 67
            ||.||..|::.:.: |:|....|..:| ..|:|||   ...|.:..:|.:.:|        :.|.
 Frog    26 LLPFLCALAAITPQ-ASQQVLRIGGIF-ETVENEPINVEELAFKFAVTNINRNRTLMPNTTLTYD 88

  Fly    68 LS-VQL-DSIEANKSDAKVLLEAICNKYATSIEKKQTPHLILDTTKSGIASETVKSFTQALGLPT 130
            :. :.| ||.||::        ..|::.|..:.....|     :..|.:::  |:|...||.:|.
 Frog    89 IQRINLFDSFEASR--------RACDQLALGVAALFGP-----SHSSSVSA--VQSICNALEVPH 138

  Fly   131 ISASYGQQGDLRQWR--DLDEAKQKYLLQVMPPADIIPEAIRSIVIHMNITNAAILYDDSFVMDH 193
            |..         :|:  .:|. |..:.:.:.|....|..|:..:|:|.:.....::|:||..:  
 Frog   139 IQT---------RWKHPSVDN-KDSFFINLHPDYAAISRAVLELVLHYSWKTVTVVYEDSTGL-- 191

  Fly   194 KYKSLLQNIQTRHVITAIAKDGKREREEQIEKLRNLDINNFFILGTLQSIRMVLESVKPAYFERN 258
                    |:.:.:|.|.::...:      .|:|.|...|       :..|.:|:.:|.:   |.
 Frog   192 --------IRLQELIKAPSRYNIK------IKIRQLPSGN-------KDARTLLKEMKKS---RE 232

  Fly   259 F--AWHAITQNEGEISSQRDNATIMFMKPMAYTQYRDRLGLLRTTYNLNEEPQLSSAFYFDLALR 321
            |  .:....:...||..|     |:.|            |::...|:           ||...:.
 Frog   233 FYVIFDCSHETAAEILKQ-----ILSM------------GMMTEYYH-----------YFFTTMD 269

  Fly   322 SF-LTIKEMLQSGAWPKDMEYLNCDDFQGGNT------------PQRNLDLRDYFTKITEPTSYG 373
            .| |.::....||........||.|:.|..:.            |:....|.|..........|.
 Frog   270 LFALDLEPYRYSGVNMTGFRLLNIDNPQVSSVVEKWSMERLQAPPKPETGLLDGMMTTDAALMYD 334

  Fly   374 TFDLVTQSTQ----------------PFN-GHSFMK-------------------------FEMD 396
            ...:|..:||                |:. |..||.                         |:||
 Frog   335 AVYMVAVATQRATQMTVSSLQCHRHKPWRFGPRFMSLIKEARWDGLTGRITFNRTDGLRRDFDMD 399

  Fly   397 INVLQIRG-----GSSVNS-----KSIGKWIS--GLNSELIVKDEEQMKNLT---ADTVYRIFTV 446
            |..|:..|     |.:||.     |.:|.|.|  |||....:||:.  .|:|   |:....:.|:
 Frog   400 IISLKEDGMEKAAGETVNHLNKVWKKVGVWNSNTGLNMTDNLKDKS--TNITDSLANRTLIVTTI 462

  Fly   447 VQAPFIM-RDETAP----KGYKGYCIDLINEIAAIVHFDYTIQEVEDGKFGNMDENGQWNGIVKK 506
            ::.|::| |....|    ..::|||:||:.|::.|:.|.|.::.|.|||:|..::.|:|||:|::
 Frog   463 LEDPYVMFRKSDKPLYGNDRFEGYCLDLLKELSNILGFTYEVRLVVDGKYGAQNDKGEWNGMVRE 527

  Fly   507 LMDKQADIGLGSMSVMAEREIVIDFTVPYYDLVGITIMMQRPSSPS-SLFKFLTVLETNVWLCIL 570
            |:|.:||:.:..:::...||.||||:.|:..| ||:|:.::|:..: .:|.||..|..::|:.:|
 Frog   528 LIDHKADLAVAPLTITYVREKVIDFSKPFMTL-GISILYRKPNGTNPGVFSFLNPLSPDIWMYVL 591

  Fly   571 AAYFFTSFLMWIFDRWSPYSYQNNREKYKD-DEEKREFNLKECLWFCMTSLTPQGGGEAPKNLSG 634
            .|....|.::::..|::||.:.|......| |..:..|.|....||.:.:|..||....||.||.
 Frog   592 LACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALST 656

  Fly   635 RLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPVESLDDLAKQYKILYAPLNGSSAMTYFERMS 699
            |:|...||.|..|||:||||||||||||.|:::|::|.||||||.||.|..:...|.||:|    
 Frog   657 RIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGSTMTFF---- 717

  Fly   700 NIEQMFYEIWKDLSLNDSLTAVERSKLAVWDYPVSDKYTKMWQAM---QEAKLPATLDEAVARVR 761
                                  ::||::.        |.|||..|   |:..|....||.:.|| 
 Frog   718 ----------------------KKSKIST--------YEKMWAFMSSRQQTALVKNNDEGIQRV- 751

  Fly   762 NSTAATGFAFLGDATDIRYLQLTNCDLQVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQ 826
               ..|.:|.|.::|.|.|:...||:|..:|.....|.|.:....||..:|:...|||.|..:.:
 Frog   752 ---LTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGK 813

  Fly   827 LEKLKEKWWKNDEALAKCDKPEDQS---DGISIQNIGGVFIVIFVGIGMACITLVFEYWWYRYRK 888
            |..:|||||:.:..      ||:.|   ..:.::||||:|||:..|:.::....:.|: .|:.||
 Frog   814 LHMMKEKWWRGNGC------PEEDSKEASALGVENIGGIFIVLAAGLVLSVFVAIGEF-IYKSRK 871

  Fly   889 NPRIIDVAEANAERSNAADHPGKLVDGVILGHSGEKFEKSKAALRPRF 936
            |..|......||.....         |:.|.|.....:|.||..|..|
 Frog   872 NSDIEQCLSFNAIMEEL---------GISLKHPKRLKKKPKAKGRSSF 910

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 91/469 (19%)
PBP2_iGluR_putative 438..836 CDD:270435 138/407 (34%)
Lig_chan 565..870 CDD:278489 105/311 (34%)
grik1XP_004912220.1 Periplasmic_Binding_Protein_Type_1 43..438 CDD:299141 92/474 (19%)
ANF_receptor 61..404 CDD:279440 74/421 (18%)
Periplasmic_Binding_Protein_Type_2 454..823 CDD:304360 138/407 (34%)
Lig_chan 585..854 CDD:278489 105/312 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.000

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