DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir25a and grin2b

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:XP_017948700.2 Gene:grin2b / 100490580 XenbaseID:XB-GENE-949327 Length:1449 Species:Xenopus tropicalis


Alignment Length:985 Identity:225/985 - (22%)
Similarity:377/985 - (38%) Gaps:267/985 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LSLLSSFSLEIAAQTTQN--INVLFINEVDNEPAAKAVEVVLTYLKKNIRYGLSV--QLDSIEAN 78
            :||:..|.:...||...|  |.|:.:...| |.|.|.|.      :|:..:.|.|  ::..:..|
 Frog    12 ISLIILFYMGCYAQKHPNMDIAVILVGTTD-EVAIKDVH------EKDDFHHLPVTPRVALVTMN 69

  Fly    79 KSDAKVLLEAICNKYATSIEKKQTPHLIL--DTTKSGIAS----ETVKSFTQALGL----PTISA 133
            :||.|.::..||:    .:..|:...::.  ||.:..||.    .:|::.|..||:    ..|.|
 Frog    70 ESDPKSIITRICD----LMSDKKVQGVVFGDDTDQEAIAQILDFISVQTLTPILGIHGGSSMIMA 130

  Fly   134 SYGQQGDLRQWRDLDEAKQKYLLQVMPPADIIPEAIRSIVIHMNITNAAILYDDSFVMDHKYKSL 198
            ...:.....|:....|.:...:|.:|...|..   |.|||     |.....|.|   .::|.:|.
 Frog   131 DKEEASMFFQFGPSIEQQASVMLNIMEEYDWY---IFSIV-----TTYFPGYQD---FENKVRST 184

  Fly   199 LQNIQTRHVITAIAKDGKREREEQIEKLRNLDINNFFI---LGTLQSIRMVLESVKPA---YFE- 256
            ::|.....           |.||.|....:||.|:..|   |..|||..::|...|..   .|| 
 Frog   185 IENSFVGW-----------ELEEVIHLDMSLDDNDSKIQNQLKKLQSPVILLYCTKEEATYIFEV 238

  Fly   257 --------RNFAWHAITQNEGEISSQRDNATIMFMKP-----MAYTQY--------RDRLGLLRT 300
                    ..:.|...:...|      |..|:....|     ::|.::        ||.:.::.|
 Frog   239 AHSVGLTGYGYTWIVPSLVAG------DTDTVPAEFPTGLISVSYDEWDYDLPARVRDGIAIITT 297

  Fly   301 TYNL-----NEEPQLSSAFYFDLALRSFLTIKEMLQSGAWPKDM--EYLNCDDFQGGNTPQRNLD 358
            ..:.     |..||..|:.|            .:.:|..:...|  .||....|:|     |||.
 Frog   298 AASTMLSEHNSIPQSKSSCY------------NIQESRVYEAHMLKRYLINVTFEG-----RNLS 345

  Fly   359 LRDYFTKITEPTSYGTFDLVTQSTQPFNGHSFMKFEMDINVLQIRGGSSVNSKSIGKWIS-GLNS 422
            ..:                        :|     ::|...::.|........:.:||:.. .|..
 Frog   346 FSE------------------------DG-----YQMHPKLVIILLNQQRKWERVGKYKDRSLKM 381

  Fly   423 --------ELIVKDEEQMKNLTADTVYRIFTVVQAPFIMRDETAP-------------------- 459
                    ||....||.     .|....|.|:.:|||::.::..|                    
 Frog   382 KYYVWPVFELYPNSEEH-----KDEHLSIVTLEEAPFVIVEDVDPLSGTCMRNTVPCRKQIRTEN 441

  Fly   460 ----------KGYKGYCIDLINEIAAIVHFDYTIQEVEDGKFGNMDENGQWNGIVKKLMDKQADI 514
                      :..||:|||::.:||..|.|.|.:..|.:||.|. ..||.|||::.:::.|:|.:
 Frog   442 RTEEGGNYIKRCCKGFCIDILKKIAKTVKFTYDLYLVTNGKHGK-KINGTWNGMIGEVVTKRAYM 505

  Fly   515 GLGSMSVMAEREIVIDFTVPYYDLVGITIMMQRPSSPSSLFKFLTVLETNVWLCILAAYFFTSFL 579
            .:||:::..||..|:||:||:.: .||::|:.|.:...|...||.....:||:.:.......|.:
 Frog   506 AVGSLTINEERSEVVDFSVPFIE-TGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAV 569

  Fly   580 -MWIFDRWSPYSYQNNREKYKDDEEK--REFNLKECLWFCM-----TSLTPQGGGEAPKNLSGRL 636
             :::|:.:||..|  || ...|..|.  ..|.:.:.:|...     .|:..|.    ||..:.::
 Frog   570 AVFVFEYFSPVGY--NR-CLADGREPGGPSFTIGKAIWLLWGLVFNNSVPVQN----PKGTTSKI 627

  Fly   637 VAATWWLFGFIIIASYTANLAAFLTVSRLDTPVESLDDLAKQYKILYAPL-------NGSSAMTY 694
            :.:.|..|..|.:||||||||||:........|..|.|...|....::|.       |||:    
 Frog   628 MVSVWAFFAVIFLASYTANLAAFMIQEEYVDQVSGLSDKKFQRPNDFSPAFRFGTVPNGST---- 688

  Fly   695 FERMSNIEQMFYEI------WKDLSLNDSLTAVERSKLAVWDYPVSDKYTKMWQAMQEAKLPATL 753
             ||  ||...:.|:      :...|:.|:|.:::..||.                          
 Frog   689 -ER--NIRNNYLEMHSYMVKFNQRSVQDALLSLKTGKLD-------------------------- 724

  Fly   754 DEAVARVRNSTAATGFAFLGDATDIRYL--QLTNCDLQVV--GEEFSRKPYAIAVQQGSHLKDQF 814
                            ||:.||..:.|:  :...|.|..:  |:.|:...|.||:|:.|..|.|.
 Frog   725 ----------------AFIYDAAVLNYMAGRDEGCKLVTIGSGKVFATTGYGIAIQKDSGWKRQV 773

  Fly   815 NNAILTLLNKRQLEKLKEKWWKNDEALAKCDKPEDQSDGISIQNIGGVFIVIFVGIGMACITLVF 879
            :.|||.|....::|:|:..|.   ..:...:|.|..|..:.|.|:.|||.::...:.::.||.:.
 Frog   774 DLAILQLFGDGEMEELEALWL---TGICHNEKNEVMSSQLDIDNMAGVFYMLAAAMALSLITFIM 835

  Fly   880 E---YWWYRY 886
            |   :|..|:
 Frog   836 EHLFFWQLRH 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 87/441 (20%)
PBP2_iGluR_putative 438..836 CDD:270435 115/452 (25%)
Lig_chan 565..870 CDD:278489 79/329 (24%)
grin2bXP_017948700.2 PBP1_iGluR_NMDA_NR2 28..383 CDD:380601 88/439 (20%)
PBP2_iGluR_NMDA_Nr2 400..800 CDD:270436 115/460 (25%)
NMDAR2_C 837..1449 CDD:402274 2/9 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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