DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir25a and LOC100149482

DIOPT Version :9

Sequence 1:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster
Sequence 2:XP_009290417.1 Gene:LOC100149482 / 100149482 -ID:- Length:1959 Species:Danio rerio


Alignment Length:998 Identity:210/998 - (21%)
Similarity:375/998 - (37%) Gaps:257/998 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LSLLSSFSLEIAAQTTQNINVLF-INEVDNEPAAKA-VEVVLTYLKKNIRYGL------------ 68
            ||||.:. :|.|.||:.:.::|. ..|.:.:|.|.. ..:.:.:....::.|.            
Zfish     7 LSLLLAL-VEWAGQTSSSPHLLLRPRERERDPVASMHFNIAVIHAGSTVQQGEAGAAAAAGRVPY 70

  Fly    69 -------------------SVQLDSIEANKSDAKVLLEAICNKYATS-----IEKKQTPHLILDT 109
                               |..:..::.|.|..:.||..:|:..|..     :.:.:.| |.|.|
Zfish    71 PGFGRVHSSFGESVVTQWGSANVIWLQVNDSSPRTLLSQLCDLLAARPLQGLVYEDERP-LPLAT 134

  Fly   110 TKSGIASETVKSFTQALGLPTISASYG--------QQGDL-RQWRDLDEAKQKYLLQVMPPADII 165
            .......|.|.:.|   |||.::...|        :.|.: .|:......:.:.:.:|:...|..
Zfish   135 GPLAPMLEFVSAQT---GLPIVAVGGGAALGRVPQESGSIFLQFSSSTALQLEVIFEVLEEYDWT 196

  Fly   166 PEAIRSIVIH-----MNITNAAILYDDSFVMDHKYKSLLQN-------IQTRHVITAIAKDGKRE 218
            ..::.|...|     :::...  |.|.||:...|...::.|       ::|:.::        :|
Zfish   197 AFSVVSTRHHGYQDFLSVVEG--LTDGSFIGWEKKSIVMLNLTDDPGGVRTQRLL--------KE 251

  Fly   219 REEQIEKLRNLDINNFFILGTLQSIRMVLESVKPAYFERNF--AWHAITQNEGEISSQRDNATIM 281
            .|.|                    :|::..|.:.|  |:.|  ||.|         .|...:.|.
Zfish   252 NEAQ--------------------VRLLYCSQEEA--EQVFLAAWAA---------GQAGASHIW 285

  Fly   282 F-----MKPMAYTQYRDRLGLLRTTYNLNEEPQLSSAFYFDLALRSFLTIKEMLQSGAWPKDMEY 341
            |     :..:..|....||..:| .....:||:...|....:.....:.:::  ..||.......
Zfish   286 FAVGPALSELGLTGLPKRLFAVR-PQGWRDEPRRRIARGVSILTHGAVALRK--DYGATGGPHFV 347

  Fly   342 LNCDDFQGGNTPQRNLDLRDYFTKITEPTSYGTFDLVTQSTQPFNGHSFMKFEMDINVLQIRGGS 406
            .||.  ..||..||......||:.||......:|........||           ::|:....||
Zfish   348 TNCQ--TDGNRTQRIRGRMRYFSNITLGGRDYSFSNEGYLANPF-----------LDVISYTPGS 399

  Fly   407 SVNSKSIGKWISGL-----------NSELIVKDEEQMKNLTADTVYRIFTVVQAPFI-------- 452
              ..:.:|.|.:|:           ...|...|:.|.        .|:.|:.:.||:        
Zfish   400 --GWEDVGWWENGVLRLRYPAWSRYGPFLQPPDDAQH--------LRVVTLEERPFVIVELADAA 454

  Fly   453 -------------------MRDETAP--KGYKGYCIDLINEIAAIVHFDYTIQEVEDGKFGNMDE 496
                               :::..||  :..||:|||::..:|.||.|.|.:..|.:||.|...:
Zfish   455 SGTCIRDSVPCRRPLNASALQEGVAPVKQCCKGFCIDILKRLARIVGFTYDLYLVTNGKHGKKID 519

  Fly   497 NGQWNGIVKKLMDKQADIGLGSMSVMAEREIVIDFTVPYYDLVGITIMMQRPSSPSSLFKFLTVL 561
             |.|||:|.:::.|:||:.:||:::..||..|:||:||:.: .||::|:.|.:...|...||...
Zfish   520 -GVWNGMVGEVVYKRADMAIGSLTINEERSEVVDFSVPFVE-TGISVMVSRSNGTVSPSAFLEPY 582

  Fly   562 ETNVW-----LCILAAYFFTSFLMWIFDRWSPYSYQNNREKYKDDEEKREFNLKECLW----FCM 617
            ...||     :|:..    .:..::||:.:||..|..:.:..|.....: |.:.:.:|    ...
Zfish   583 SPAVWVMMFVMCLTV----VAVTVFIFEFFSPVGYNRSLQSGKKAGGSK-FTIGKSIWLLWALVF 642

  Fly   618 TSLTPQGGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPVESLDDLAKQYKI- 681
            .:..|.   |.||..:.:::...|..|..|.:||||||||||:........|..|.|...|:.. 
Zfish   643 NNSVPV---ENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYIDTVSGLSDKKFQHPTE 704

  Fly   682 LYAPL------NGSSAMTYFERMSNIEQMFYEIWKDLSLNDSLTAVERSKLAVWDYPVSDKYTKM 740
            .|.||      |||:.........::.|...: :...|:.|:::.::..||.             
Zfish   705 QYPPLKFGTVPNGSTEKNIRSNYPDMHQYMVK-YNQKSVEDAISHLKTGKLD------------- 755

  Fly   741 WQAMQEAKLPATLDEAVARVRNSTAATGFAFLGDATDIRYLQLTN--CDLQVV--GEEFSRKPYA 801
                                         ||:.||..:.|:...:  |.:..:  |:.|:...|.
Zfish   756 -----------------------------AFIYDAAVLNYMARKDEGCKVMTIGSGKVFATTGYG 791

  Fly   802 IAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWWKNDEALAKCDKPEDQSDGISIQNIGGVFIVI 866
            ||:.:.|..|...:.|:|.|:...::|.|:..|.   ..:...||.|..|..:.|.|:.|||.::
Zfish   792 IALIKNSRWKRPLDLALLQLVGDDEIEMLERLWL---SGICHNDKIEVMSSKLDIDNMAGVFYML 853

  Fly   867 FVGIGMACITLVFE---YWWYRY 886
            .|.:|::.:...:|   ||..|:
Zfish   854 LVAMGLSLLVFAWEHLVYWRLRH 876

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 78/462 (17%)
PBP2_iGluR_putative 438..836 CDD:270435 106/446 (24%)
Lig_chan 565..870 CDD:278489 72/324 (22%)
LOC100149482XP_009290417.1 PBP1_iGluR_NMDA_NR2 44..421 CDD:107373 74/439 (17%)
PBP2_iGluR_NMDA_Nr2 433..831 CDD:270436 107/461 (23%)
HisJ <487..>570 CDD:223904 34/84 (40%)
Lig_chan 585..857 CDD:278489 72/325 (22%)
NMDAR2_C 868..>900 CDD:287527 3/9 (33%)
FAM76 <1763..>1856 CDD:292665
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591786
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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