DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fnta and rabggta

DIOPT Version :9

Sequence 1:NP_001260048.1 Gene:Fnta / 33682 FlyBaseID:FBgn0031633 Length:331 Species:Drosophila melanogaster
Sequence 2:NP_001070131.1 Gene:rabggta / 767725 ZFINID:ZDB-GENE-060929-1042 Length:580 Species:Danio rerio


Alignment Length:356 Identity:85/356 - (23%)
Similarity:133/356 - (37%) Gaps:97/356 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 GEKSQRALDLTTDALRLNPANYTVWQYRRDVLRELKA--------DLY-AELDYLTEVIGQNSKN 116
            ||..:.|||||...|..||...|:|.|||:||..|:.        .|| :||.::...:..|.|:
Zfish    42 GEHDEEALDLTQQLLSSNPDFATLWNYRREVLLHLETLREKDEVQKLYESELHFIEACLKVNPKS 106

  Fly   117 YQVWHHRRVIVEMLNDP--SNELELTENALVNDGDAKNYHAWQHRQWAIRSFNL-YDDELSFVDR 178
            |..||||..:...|..|  :.||.|.:..|  ..|.:|:|.|.:|:..::...: .:.||.|.||
Zfish   107 YGCWHHRSWVNTRLPQPDWTRELGLCDRCL--SLDERNFHCWDYRRLVVKESGVSVEQELQFTDR 169

  Fly   179 LISEDQRNNSAWNQRFFVIKHFGFTP-------------------------ELIQRELSYTMNRI 218
            ||..:..|.|:|:.|..::......|                         |.:.:|.....|..
Zfish   170 LIGSNFSNYSSWHYRSTLLPQLRPQPVLDSAHNTSPSPSASPQSHSHRVCEEQLLKEYELAHNAF 234

  Fly   219 RIIKNNESAWNY---LVG------------VMRQGDSGNALLSSYPD--------VVDFVEELYQ 260
            ....|::|||.|   |:|            ..|:|:..:...|....        |:|...:..|
Zfish   235 FTDPNDQSAWFYYRWLLGRAEREEMISCVYASREGERVSVAFSKPVHAGSVGLMLVLDGQPQQVQ 299

  Fly   261 AGNRSPYLL---AFLIDL-----------------------YQEQALQLKASDSDQLARKVYGLC 299
            ..|..|.|.   ..|.||                       :::.||....::|         .|
Zfish   300 WRNAHPRLRHSPVCLRDLPAGSISDTSNEHNLTIHWTDKHTHRDCALYTGCAES---------WC 355

  Fly   300 EDMATKHDVIRRKYWQYVANHLKNQLSTVEQ 330
            .|.||..::.|.:.....::.|:.:|.:..|
Zfish   356 RDSATDQELFRSELSVEKSSVLQAELQSCNQ 386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FntaNP_001260048.1 PLN02789 14..314 CDD:215423 82/338 (24%)
rabggtaNP_001070131.1 BET4 38..>252 CDD:227823 61/211 (29%)
PPTA 92..116 CDD:279565 9/23 (39%)
PPTA 128..154 CDD:279565 9/27 (33%)
PPTA 163..190 CDD:279565 11/26 (42%)
PPTA 226..253 CDD:279565 8/26 (31%)
RabGGT_insert 260..359 CDD:285012 17/107 (16%)
LRR_RI 325..580 CDD:238064 11/71 (15%)
leucine-rich repeat 456..474 CDD:275378
leucine-rich repeat 475..500 CDD:275378
LRR_8 478..533 CDD:290566
leucine-rich repeat 501..522 CDD:275378
leucine-rich repeat 523..547 CDD:275378
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5536
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1527547at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.