DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3225 and Zcchc17

DIOPT Version :9

Sequence 1:NP_608860.1 Gene:CG3225 / 33680 FlyBaseID:FBgn0031631 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_001102737.1 Gene:Zcchc17 / 500555 RGDID:1565267 Length:241 Species:Rattus norvegicus


Alignment Length:204 Identity:38/204 - (18%)
Similarity:67/204 - (32%) Gaps:66/204 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 NMGLMEQRERLPIRQYRDQILYCLEKHQVVILVGETGSGKSTQVPQYLYEWGWHTKGLI------ 95
            |.|..|..|.||       .||.:.:.:|.::   |..|...::|      |...:||:      
  Rat     2 NSGRPETMENLP-------ALYTIFQGEVAMV---TDYGAFIKIP------GCRKQGLVHRTHMS 50

  Fly    96 --GITEPRRV--------------------STVTLANRVA------------------QERGELV 120
              .:.:|..:                    ..|:|:.:|.                  :.|....
  Rat    51 SCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSF 115

  Fly   121 GDTVGYVVRFLESMSSCTKIKFMTEGILLREVLADPLLTQYGVIIVDEAHERNMLTDMILGLLKK 185
            .|..|..:. ||::.:.|..|...:|...::....|..|:|.::..:|..:.....:   ||.|.
  Rat   116 QDYTGQKIT-LEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLVPEEEEEKEEAKAE---GLEKP 176

  Fly   186 ILRKRSSLK 194
            ...|.||.|
  Rat   177 DPTKNSSRK 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3225NP_608860.1 HrpA 40..668 CDD:224557 36/201 (18%)
DEXDc 64..202 CDD:238005 30/177 (17%)
HELICc 289..380 CDD:197757
HA2 448..534 CDD:214852
OB_NTP_bind <581..670 CDD:285018
Zcchc17NP_001102737.1 S1_pNO40 13..86 CDD:240191 12/88 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.