DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3225 and prp43

DIOPT Version :9

Sequence 1:NP_608860.1 Gene:CG3225 / 33680 FlyBaseID:FBgn0031631 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_595937.1 Gene:prp43 / 2540057 PomBaseID:SPBC16H5.10c Length:735 Species:Schizosaccharomyces pombe


Alignment Length:683 Identity:278/683 - (40%)
Similarity:419/683 - (61%) Gaps:48/683 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 ITDSAGGEQQSSAFV----FNVNHNMGLMEQRERLPIRQYRDQILYCLEKHQVVILVGETGSGKS 77
            :..:|..|:..:.|.    |:.|: ..::|.|..||:.|.|::.|....::|:::.||||||||:
pombe    42 VAQAAKAEEGPNNFFNDKPFSQNY-FKILETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKT 105

  Fly    78 TQVPQY-LYEWGWH-TKGLIGITEPRRVSTVTLANRVAQERGELVGDTVGYVVRFLESMSSCTKI 140
            ||:||: ||:...| |...|..|:||||:.:::|.|||.|....:|:.|||.:||.:.....|.:
pombe   106 TQIPQFVLYDELPHLTNTQIACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPNTLL 170

  Fly   141 KFMTEGILLREVLADPLLTQYGVIIVDEAHERNMLTDMILGLLKKILRKRSSLKLIISSATIDAS 205
            |:||:|:||||.:.|.:|::|..||:||||||.:.||:::||:|::..:|..||:|:.|||:||.
pombe   171 KYMTDGMLLREAMTDHMLSRYSCIILDEAHERTLATDILMGLMKRLATRRPDLKIIVMSATLDAK 235

  Fly   206 FFSE-FFSWPGSGEVSVKLSIEGRMHPVSNFYLNEPCADYVKETVETVWKLHQKEPPGDILAFLT 269
            .|.: ||..|       .|::.||.:||..:|..||..||::..:.||.::|.:|.|||||.|||
pombe   236 KFQKYFFDAP-------LLAVPGRTYPVEIYYTQEPERDYLEAALRTVLQIHVEEGPGDILVFLT 293

  Fly   270 GQEEV--------LEALDLLREYIASSEQENLKVLPMYGSMSSTDQLSVFFTPPKGT-----RKV 321
            |:||:        |||.||:||..|..    |||.|:|||:....|..:|...|:.|     |||
pombe   294 GEEEIEDACRKITLEADDLVREGAAGP----LKVYPLYGSLPPNQQQRIFEPTPEDTKSGYGRKV 354

  Fly   322 VLATNIAETSITIPGIVYVIDCGYVKVKWYNPKTCSDSLVIVPVSKASAIQRAGRAGRMRPGKVY 386
            |::|||||||:||.|||||:|.|:.|.|.|||:...:||::.|:|||||.||||||||.||||.:
pombe   355 VISTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 419

  Fly   387 RLYTKSDY-EALAPRQPPEMRRSELSGAILQLKALGIGNILRFDFPSPPPAQNLLSALESLFALD 450
            ||||:..: :.|..:..||:.||.||..:|:||.|||.:::.||:..||..:.::.|||.|..|:
pombe   420 RLYTEEAFRKELIEQTYPEILRSNLSSTVLELKKLGIDDLVHFDYMDPPAPETMMRALEELNYLN 484

  Fly   451 AIDEQGNLTKPVGYLLAELPFSAMLSKMLYVSGQMGCSEEIITIIALLQVQSIFSRPASA--VAQ 513
            .:|:.|:|| |:|...:|.|....|:.||..|.:..||.|::::.|||.|.::|.||.||  :|.
pombe   485 CLDDNGDLT-PLGRKASEFPLDPNLAVMLIRSPEFYCSNEVLSLTALLSVPNVFVRPNSARKLAD 548

  Fly   514 QSGRIAHRKFEVAEGDFITMLNAYTGFVEEGMTKEFCGQYFLIYRNLKRAHSLREQL-ITVARKK 577
            :    ..::|...:||.:|:||.|..:.....|.::|..:||.:|.|..|.::|:|| .|:.|::
pombe   549 E----MRQQFTHPDGDHLTLLNVYHAYKSGEGTADWCWNHFLSHRALISADNVRKQLRRTMERQE 609

  Fly   578 YGI---PIFSCKGDVEKLCKCITAGFFTQVAYLHHSGV-YRQISSGTELAIHPNSTLYTLPQAQY 638
            ..:   | |..|.....:.:.:.:|||.|||....:|. |..:.....:::||:..|...|  ::
pombe   610 VELISTP-FDDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQVVSLHPSCGLSVTP--EW 671

  Fly   639 VVYGELLQTTKLFMNYVTVIKREWLTELAPHYY 671
            |||.|.:.|||.|:..||.|:.|||.||||:||
pombe   672 VVYNEFVLTTKSFIRNVTAIRPEWLIELAPNYY 704

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3225NP_608860.1 HrpA 40..668 CDD:224557 269/651 (41%)
DEXDc 64..202 CDD:238005 65/139 (47%)
HELICc 289..380 CDD:197757 51/95 (54%)
HA2 448..534 CDD:214852 30/87 (34%)
OB_NTP_bind <581..670 CDD:285018 33/89 (37%)
prp43NP_595937.1 DEXDc 80..258 CDD:214692 79/184 (43%)
DEXDc 92..232 CDD:238005 65/139 (47%)
HELICc 257..421 CDD:238034 84/167 (50%)
HA2 482..565 CDD:214852 30/87 (34%)
OB_NTP_bind 599..703 CDD:285018 37/106 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53574
OrthoFinder 1 1.000 - - FOG0000059
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100085
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.720

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