DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3225 and smgl-2

DIOPT Version :9

Sequence 1:NP_608860.1 Gene:CG3225 / 33680 FlyBaseID:FBgn0031631 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_001294374.1 Gene:smgl-2 / 177135 WormBaseID:WBGene00021365 Length:1089 Species:Caenorhabditis elegans


Alignment Length:806 Identity:232/806 - (28%)
Similarity:354/806 - (43%) Gaps:205/806 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 AFVFNVNHNMGLMEQ----RERLPIRQYRDQILYCLEKHQVVILVGETGSGKSTQVPQYLYEWGW 89
            |..||.:.....:::    ::.|||.:...:|:..|:.:||:|:.|:||.||||||||||.:.|:
 Worm   122 ALQFNQHQKFQKLQKLRKLQKELPIAERAGEIVELLKTNQVLIVAGDTGCGKSTQVPQYLLKAGF 186

  Fly    90 HTKGLIGITEPRRVSTVTLANRVAQERGELVGDTVGYVVRFLESMSSCTKIKFMTEGILLREVLA 154
            ..   :..|:|||::...||.|||.|.....|..|.:.:||..:.|..||:.|:|||:|||::..
 Worm   187 TG---VACTQPRRIACTALARRVAYETLNQYGSEVAFQIRFETTKSQKTKLLFLTEGLLLRQMEK 248

  Fly   155 DPLLTQYGVIIVDEAHERNMLTDMILGLLKKILRKRSSLKLIISSATIDASFFSEFFSWPGSGEV 219
            |.||.:|.|||:||.|||::.:|:::|||:.:..||..||||:.||||:...|..:|.  |:..|
 Worm   249 DSLLEKYNVIILDEVHERHLTSDLLIGLLRDLCTKRDDLKLILMSATINLDLFKGYFE--GAPVV 311

  Fly   220 SVK---LSIEGRMHPVSNFYLN----------EPCADYVKETVETVWKLHQKEPPGDILAFLTGQ 271
            .|.   ..|:.|.||:..|...          ||   |:| .:|.:.|.......||.|.||.|.
 Worm   312 QVPGRLFPIDVRWHPIKQFIDQSDKKTHKIDPEP---YLK-ILELIDKQFPSTQRGDALIFLNGV 372

  Fly   272 EEVLEALDLLREYIASSEQEN-LKVLPMYGSMSSTDQLSVFFTPPKGTRKVVLATNIAETSITIP 335
            .|:....:.|:.|   :|..| ..:|.::.::|..:|..||...|.|.||.:|:||:||||:||.
 Worm   373 AEISMVAEHLKNY---AELTNGWIILMLHSTLSVEEQDKVFDQAPVGIRKCILSTNVAETSVTID 434

  Fly   336 GIVYVIDCGYVKVKWYNPKTCSDSLVIVPVSKASAIQRAGRAGRMRPGKVYRLYTKSDYEALAPR 400
            ||.:|||.|.|.:..:.|.|.:..|....||||||.||.|||||..||..||||::..:|.:...
 Worm   435 GIRFVIDSGKVNLIKHEPGTGTQKLTEFWVSKASANQRKGRAGRTGPGICYRLYSQEQFEKMDDF 499

  Fly   401 QPPEMRRSELSGAILQLKALGIGNILR-FDFPSPPPAQNLLSALESL-FALDAIDEQGNL--TKP 461
            ...|:.|..|....|::.:|.:|...| |.|...|....|...||.| |......::|::  ...
 Worm   500 TVSEINRVSLQEMALKMISLNLGLDPRTFPFIEKPSEDVLNEGLEVLKFQRVLRSDRGDILTLTA 564

  Fly   462 VGYLLAELPFSAMLSKMLYVSGQMGC----SEEIITIIALLQVQSIFSRPASAVAQQSGRIAHRK 522
            :|.::::||....::|||.    .||    .|.::|:.|.|.|||.|:..           ::|:
 Worm   565 LGNMVSKLPVEVPIAKMLV----YGCVVDELEVMLTVAAGLSVQSPFTNR-----------SYRE 614

  Fly   523 FEVAE---------GDFITMLNAYTGFV--------------EEGMTK-------EFCGQYFLIY 557
            .|:.|         ||..|:::.:..:|              |.|:.:       :...||..|.
 Worm   615 LEIVERRASLTSPLGDPFTLISIFREWVLQKAFEGTARRWTMENGIDEHRLYEISKLRAQYRQIL 679

  Fly   558 R--------------------------------NLKRA--HSLREQLITVARKKYGIPIFSCK-- 586
            .                                :||::  ::.|.|.:..|.|.:. .|...|  
 Worm   680 EDAGLVEKASAAETGEDDSRQRRIDQGEKRKLFDLKKSQRNNDRRQKVLNANKHFD-KILEDKEE 743

  Fly   587 -------------------------GDVEKLCK--------------CITAGFFTQVAYL---HH 609
                                     .|||.:.|              .|.||.:...:.|   :.
 Worm   744 EDLEAEKDPLKADVKTVEFLLSHKQRDVENIRKTHKISRKTAEVVRVIIAAGLYPNFSILDPVNK 808

  Fly   610 SGVYRQISSGTEL----AIHPNSTLYTLPQAQY--------------------VVYGELLQTTK- 649
            .|..:::.:.|.|    .|||||::     |||                    ..||.||:||| 
 Worm   809 YGYGQEMFTHTRLKPFTQIHPNSSI-----AQYHPETIDPRQGSDGFSRLHQIPFYGLLLETTKP 868

  Fly   650 -------------LFMNYVTVIKREW 662
                         |.:....||:.:|
 Worm   869 YICNVMPVPAVYTLLVAQKIVIEDDW 894

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3225NP_608860.1 HrpA 40..668 CDD:224557 229/795 (29%)
DEXDc 64..202 CDD:238005 65/137 (47%)
HELICc 289..380 CDD:197757 42/91 (46%)
HA2 448..534 CDD:214852 23/100 (23%)
OB_NTP_bind <581..670 CDD:285018 32/164 (20%)
smgl-2NP_001294374.1 DEXDc 130..330 CDD:214692 81/204 (40%)
DEXDc 161..296 CDD:238005 65/137 (47%)
Helicase_C 350..480 CDD:278689 54/132 (41%)
HA2 561..635 CDD:214852 22/88 (25%)
OB_NTP_bind <775..888 CDD:285018 24/117 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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