Protein Alignment CG3294 and U2af1

DIOPT Version :10

• Sequence 1: NP_608857.2
• Gene: CG3294 / 33677
• FlyBaseID: FBgn0031628
• Length: 456
• Species: Drosophila melanogaster
• Sequence 2: NP_001037756.1
• Gene: U2af1 / 687575
• RGDID: 1584190
• Length: 239
• Species: Rattus norvegicus
• Alignment Length: 302
• Identity: 61/302 - (20%)
• Similarity: 112/302 - (37%)
• Gaps: 94/302 - (31%)

  Fly   156 HLLRVMETHPEERACEFFSRTNCCRYGHACTFNHRRPMLGRILLIRHFFNHSMLQK------RCT 214
            :|..:..|..::..|.|:.:...||:|..|:..|.:|...:.:.:.:.:.:.....      ||.
  Rat     4 YLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCA 68

  Fly   215 HKEYASAEEHLELTEQDLRHDYDEFFNDVVEEL-RKFGTIVNFRTVRNTLEHLRGHVFVEYTNER 278
                        :::.:::..|||||.:|..|: .|:|.:.......|..:||.|:|:|::..|.
  Rat    69 ------------VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREE 121

  Fly   279 SALRAFTNLQGRYYASKRLNVEFSNLRTWRGAVCGLSLTRKCPKGNDCGYLHLFGNPNNLFNTEL 343
            .|.:|..:|..|::..:.::.|.|.:..:|.|.|......:|.:|..|.::||
  Rat   122 DAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHL------------ 174

  Fly   344 EYTSGPRSERRSSQTPTAKTPSWDEHSEHGRNWRWSASPEVELENSKDLGNRGRDLKNNQQRNHH 408
                          .|.::                      ||.         |:|...:::.|.
  Rat   175 --------------KPISR----------------------ELR---------RELYGRRRKKHR 194

  Fly   409 SRSRSDRSSVRSKREHS-------------SSGSSHDDRRSK 437
            |||||     |.:|..|             ..|...|.|||:
  Rat   195 SRSRS-----RERRSRSRDRGRGGGGGGGGGGGRERDRRRSR 231

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG3294	NP_608857.2	RRM_SF	197..303	CDD:473069	23/112 (21%)
U2af1	NP_001037756.1	zf-CCCH	13..39	CDD:459885	7/25 (28%)
		RRM_U2AF35	43..146	CDD:409954	23/114 (20%)
		zf-CCCH	149..175	CDD:459885	8/51 (16%)