DRSC/TRiP Functional Genomics Resources

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Protein Alignment fipi and rig-3

DIOPT Version :9

Sequence 1:NP_787975.1 Gene:fipi / 33676 FlyBaseID:FBgn0031627 Length:450 Species:Drosophila melanogaster
Sequence 2:NP_509155.1 Gene:rig-3 / 180958 WormBaseID:WBGene00004370 Length:487 Species:Caenorhabditis elegans


Alignment Length:433 Identity:100/433 - (23%)
Similarity:170/433 - (39%) Gaps:86/433 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 ESLIVQC--RSPDP--KVELHWKSPKG------------EIIREHKGRIHIEQTSTEQLKIVFAH 88
            :.|:|.|  .|.:.  |.:|.||...|            .:|...||..| .:||     :.|:.
 Worm    55 KKLMVSCVFESDEQIHKSDLLWKQANGNNIDGESNPSLFSVILNEKGSKH-RKTS-----LHFSS 113

  Fly    89 IALADKGNWSC--EAADGSLHSKSFDLIVYQKITFTENATVMTVKEGEKATILCEVKG----EPQ 147
            :...|.|.::|  ..|.|....|:..|:|...|.:.:..||.....||..||.|.|||    ||.
 Worm   114 VHTRDTGLYTCTGRTAGGENFEKTIKLVV
LPAIEWNDKDTVKGALLGEPITIDCGVKGPSGKEPM 178

  Fly   148 PNVTWHFNGQPISAGAADDSKFRILADGLLINKVTQNDTGEYACRAYQVNSIASDMQERT----- 207
            ..:| :.||:|:     |:..:.|..:...|:.:.:    |:|  ...|:.|..:|.:.|     
 Worm   179 IQMT-NGNGEPL-----DEEIWTIAGNEATIDSLKK----EHA--ELTVSCITIEMHQETSKEEF 231

  Fly   208 --VLMKIEHKPIWSKTPF---VSLKYAYING---TATLMCEAL-AEPPA-NFTWYRKHNKLHSNN 262
              |..|..:..:::...|   .|::|..|:.   .|.:.|... :.||. ::|:|....::..::
 Worm   232 PVVDRKDVNIEVYTLPEFETEESVQYTVIDNHVRDAIIYCNVTHSFPPVRHYTFYHGDEEIKMSD 296

  Fly   263 R--LYTIQSDSYWSSLTIHVLNTSAFDNYRCRARNDLGTIERTTRLEQGEKPPSPANFQLRGFNS 325
            :  ::.....|..:.|.||.:|.:....|:|.|.|.......|..|.:...|..|....:.....
 Worm   297 KFNIFVNVGVSQGAHLKIHNVNENDLGTYKCEANNIKAKSYHTIHLREANAPAEPKVTLIEDKRH 361

  Fly   326 NTFDVVLSAPRGPPDSPMGVNGFRIEYMTEMEFK------TDAGKWTNARRKDYAFEEGATFLLT 384
            :....|.|..| .||.|          ||.:|.:      .:|...::....|..::..:.|:..
 Worm   362 SIIWKVESIDR-DPDLP----------MTAVEIRHLRAGTAEASGVSDEDISDAYWKSHSIFMQR 415

  Fly   385 NLEPDTVYLV-----------RAASRNLAGFSDFTKVEKYKTL 416
            |::.|.:|.:           |....|.|||.| :.|.:.|||
 Worm   416 NIKDDGIYEINGLRHGHEYVWRFRQINEAGFGD-SVVLRAKTL 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fipiNP_787975.1 IG_like 33..115 CDD:214653 23/92 (25%)
I-set 128..202 CDD:254352 21/77 (27%)
Ig 133..>193 CDD:299845 19/63 (30%)
IG_like 228..307 CDD:214653 18/85 (21%)
Ig 235..305 CDD:143165 16/73 (22%)
FN3 312..415 CDD:238020 24/119 (20%)
rig-3NP_509155.1 IG_like 48..142 CDD:214653 23/92 (25%)
Ig 267..341 CDD:319273 16/73 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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