DRSC/TRiP Functional Genomics Resources

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Protein Alignment fipi and rig-4

DIOPT Version :9

Sequence 1:NP_787975.1 Gene:fipi / 33676 FlyBaseID:FBgn0031627 Length:450 Species:Drosophila melanogaster
Sequence 2:NP_501339.2 Gene:rig-4 / 177597 WormBaseID:WBGene00004371 Length:2325 Species:Caenorhabditis elegans


Alignment Length:454 Identity:93/454 - (20%)
Similarity:150/454 - (33%) Gaps:121/454 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 LSPAEHSVVRYTNESLIVQCR-SPDPKVELHWKSPKGEIIREHKGRIHIEQTSTEQLKIVFAHIA 90
            |....:.:.:....||.::|. .....:::.|.. .|.::...:|::.|::...:          
 Worm   326 LKDLPNEIQKTVGSSLSLKCSVKKKSSMDIKWYK-NGLMMTTQRGKLTIDRIKQD---------- 379

  Fly    91 LADKGNWSCEAA---------------------------DG-SLHSK-SFDLIVYQKITFTENAT 126
              |.|.:.|||.                           || ||..: |.:....:|:.|.:|:.
 Worm   380 --DFGLYQCEATNAAGADLASVWVKEGEANETVATEMSEDGMSLEEEISMETPPPRKLKFFDNSK 442

  Fly   127 V-----------------------MTVKEG-EKATILCEVKGEPQPNVTWHFNGQPISAGAADDS 167
            .                       :||..| ::..:.|...|.|.||:.|..||..|.   .|:.
 Worm   443 SQEQLFPFTSELEPSQKLIKTPKDLTVASGTDRIMMECAATGSPPPNIIWLLNGHEIQ---TDNV 504

  Fly   168 KFRILADGLLINKVTQNDTGEYACRAYQVNSIASDMQERTVLMKIEHKPIWSKTPFVSLKYAYIN 232
            |:.:..|||.|:.:.::|.|||.|.....|..|:...:......||:.|...|        :.|.
 Worm   505 KYDLTNDGLAIHDIRKSDEGEYTCEISGSNVKATANVQVNGDSLIEYGPADQK--------SLIG 561

  Fly   233 GTATLMCEALAE--PPANFTWYRKHNKLHSNNRLYTIQSDSYWSSLTIHVLNTSAFDNYRCRARN 295
            ......||...|  ..|:..||.....|..|.......|.:...||.|..:.......||||...
 Worm   562 TNVEFSCEVAKEYVRKASVEWYLNDVLLPVNGNSGLRISRNRKGSLIIRQVGPDNTGEYRCRVTV 626

  Fly   296 DLGTIERTTRLEQGEKP-------------PSPANFQLR---GFNSNTFDVVLSAPRGPPDSPMG 344
            |......:..|:..|||             ..||..::|   ||:.|              .|: 
 Worm   627 DGREENASAMLQIIEKPAMPERVRAELHNETMPAKVRVRWNEGFDGN--------------EPI- 676

  Fly   345 VNGFRIEYMTEMEFKTDAGKWTN--ARRKDYAFEEGATFLLTNLE---PDTVYLVRAASRNLAG 403
                 |::..||......|.|::  ....:...|||.....|::|   |.:....|..:.|..|
 Worm   677 -----IKHAIEMRTMGPTGLWSDWTTAIDNIPKEEGKPCCWTDIEDLRPSSTAEFRVVASNKHG 735

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fipiNP_787975.1 IG_like 33..115 CDD:214653 17/111 (15%)
I-set 128..202 CDD:254352 25/74 (34%)
Ig 133..>193 CDD:299845 21/60 (35%)
IG_like 228..307 CDD:214653 18/80 (23%)
Ig 235..305 CDD:143165 17/71 (24%)
FN3 312..415 CDD:238020 22/113 (19%)
rig-4NP_501339.2 IG_like 330..402 CDD:214653 12/84 (14%)
IGc2 338..393 CDD:197706 12/67 (18%)
I-set 459..543 CDD:254352 25/86 (29%)
IGc2 478..534 CDD:197706 20/58 (34%)
IG_like 553..639 CDD:214653 21/93 (23%)
Ig 564..635 CDD:143165 17/70 (24%)
FN3 643..747 CDD:238020 22/113 (19%)
FN3 756..850 CDD:238020
FN3 858..954 CDD:238020
FN3 959..1042 CDD:238020
FN3 1057..1151 CDD:238020
FN3 1156..1251 CDD:238020
FN3 1258..1356 CDD:238020
FN3 1361..1453 CDD:238020
FN3 1464..1560 CDD:238020
FN3 1572..1664 CDD:238020
FN3 1679..1764 CDD:238020
FN3 1774..1858 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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