DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fipi and lad-2

DIOPT Version :9

Sequence 1:NP_787975.1 Gene:fipi / 33676 FlyBaseID:FBgn0031627 Length:450 Species:Drosophila melanogaster
Sequence 2:NP_001023496.1 Gene:lad-2 / 177078 WormBaseID:WBGene00002243 Length:1187 Species:Caenorhabditis elegans


Alignment Length:371 Identity:87/371 - (23%)
Similarity:139/371 - (37%) Gaps:75/371 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 ESLSLSPAEHSVVRYTNESLIVQC---RSPDPKVELHWKSPKGEIIREHKGRIHIEQTSTEQ--- 81
            :.:|:||:|.:|  .....|.:||   ..|.|.:  .|....||:   .|.||. :.||.|.   
 Worm   238 KKMSVSPSEVTV--RAGGQLKLQCIFGGRPLPTI--FWSKIDGEL---PKSRIK-DLTSHESDFG 294

  Fly    82 LKIVFAHIALADKGNWSCEAADGSLHSKSFDLIVYQKITFTENATVM-------------TVKEG 133
            ..::..::...|.|.:.|..               :.:..|.|..||             ::.|.
 Worm   295 RSLIVENVHPDDAGAYECRG---------------RHLVHTVNVRVMAAPFWEFDPPRDISLPEE 344

  Fly   134 EKATILCEVKGEPQPNVTWHFNGQPISAGAADDSKFRILADGLLINKVTQN---DTGEYACRAYQ 195
            ....:.|...|:|.|.:||..||:.:.. .|:||:..:|..|.::.....|   |||.|.|.|  
 Worm   345 STGELECLAGGQPTPIITWSMNGKFLHE-LAEDSRRVLLDHGRILRVRNLNHDLDTGVYQCNA-- 406

  Fly   196 VNSIASDMQERTVLMKIEHKPIWSKTPFVSLKYAYINGTATLMCEALAEPPANFTWY----RKHN 256
            .|.:........|.:: .|.|.: :.|........::.|..|.|:..|.|.|...|.    |...
 Worm   407 SNPLGYVFANAFVHVR-AHAPFF-RMPAARHWKVVLHSTVVLDCDVDAAPEAMVRWVDADDRPLQ 469

  Fly   257 KLHSNNRLYTIQSDSYWSSLTIHVLNTSAFDN--YRCRARNDLGTIERTTRLEQGEKP------P 313
            .:...|:|:        .:.|..|.:.::.|.  |.|...|..| |.|.|...|..||      |
 Worm   470 VVEGKNKLF--------PNHTFMVYDVNSADEGLYYCNVSNKYG-INRATNRLQVFKPTYFVRIP 525

  Fly   314 SPANFQLR-GFNSNTFDVVLSAPRGPPDSPMGVNGFRIEYMTEMEF 358
            :|....|. |..:..|...::.||.|......:||   :.:||.::
 Worm   526 TPKRLILEAGETAEVFCEAVADPRLPIRYQWTING---KVLTESQY 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fipiNP_787975.1 IG_like 33..115 CDD:214653 18/87 (21%)
I-set 128..202 CDD:254352 23/89 (26%)
Ig 133..>193 CDD:299845 19/62 (31%)
IG_like 228..307 CDD:214653 20/84 (24%)
Ig 235..305 CDD:143165 18/75 (24%)
FN3 312..415 CDD:238020 13/54 (24%)
lad-2NP_001023496.1 IG_like 48..116 CDD:214653
Ig 49..121 CDD:299845
Ig 124..214 CDD:299845
IG_like 244..325 CDD:214653 22/103 (21%)
Ig 255..325 CDD:299845 19/90 (21%)
I-set 335..421 CDD:254352 23/88 (26%)
Ig4_L1-NrCAM_like 344..422 CDD:143179 22/80 (28%)
IG_like 438..515 CDD:214653 20/85 (24%)
Ig 443..516 CDD:299845 21/81 (26%)
IG_like 527..608 CDD:214653 11/45 (24%)
Ig 535..>593 CDD:299845 9/37 (24%)
FN3 610..697 CDD:238020
FN3 721..804 CDD:238020
fn3 823..909 CDD:278470
FN3 921..1010 CDD:238020
FN3 1016..1108 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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